RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 PCDHGC4Q9Y5F7 938 aa8.29□□□□□ -1.08
UPF3A-205ENST00000479712 NEO1Q92859 1461 aa8.29□□□□□ -1.08
UPF3A-205ENST00000479712 RAPGEF6Q8TEU7 1601 aa8.29□□□□□ -1.08
UPF3A-205ENST00000479712 WRNQ14191 1432 aaPredicted RBP eCLIP8.29□□□□□ -1.08
UPF3A-205ENST00000479712 SLC35F4A4IF30 521 aa8.28□□□□□ -1.08
UPF3A-205ENST00000479712 H7C1W4 665 aa8.28□□□□□ -1.08
UPF3A-205ENST00000479712 EREGO14944 169 aa8.28□□□□□ -1.08
UPF3A-205ENST00000479712 POLR3DP05423 398 aaPredicted RBP8.28□□□□□ -1.08
UPF3A-205ENST00000479712 THBS1P07996 1170 aa8.28□□□□□ -1.08
UPF3A-205ENST00000479712 ERCC5P28715 1186 aaPredicted RBP8.28□□□□□ -1.08
UPF3A-205ENST00000479712 SFSWAPQ12872 951 aaKnown RBP8.28□□□□□ -1.08
UPF3A-205ENST00000479712 C9orf131Q5VYM1 1079 aa8.28□□□□□ -1.08
UPF3A-205ENST00000479712 PMEPA1Q969W9 287 aa8.28□□□□□ -1.08
UPF3A-205ENST00000479712 C12orf49Q9H741 205 aa8.28□□□□□ -1.08
UPF3A-205ENST00000479712 METTL5Q9NRN9 209 aaKnown RBP8.28□□□□□ -1.08
UPF3A-205ENST00000479712 CNTN3Q9P232 1028 aa8.28□□□□□ -1.08
UPF3A-205ENST00000479712 DENND4BO75064 1496 aaPredicted RBP8.27□□□□□ -1.09
UPF3A-205ENST00000479712 SHANK2Q9UPX8 1470 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 GIPC1O14908 333 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 EFSO43281 561 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 SASH3O75995 380 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 CES1P23141 567 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 ZC3H6P61129 1189 aaKnown RBP8.27□□□□□ -1.09
UPF3A-205ENST00000479712 FANCCQ00597 558 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 CCINQ13939 588 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 KRT25Q7Z3Z0 450 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 GALNT12Q8IXK2 581 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 RNF34Q969K3 372 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 C8orf37Q96NL8 207 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 USP35Q9P2H5 1018 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 LRP5O75197 1615 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 EFCAB5A4FU69 1503 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 TRAPPC8Q9Y2L5 1435 aa8.27□□□□□ -1.09
UPF3A-205ENST00000479712 GADD45BO75293 160 aaPredicted RBP8.26□□□□□ -1.09
UPF3A-205ENST00000479712 CTSHP09668 335 aa8.26□□□□□ -1.09
UPF3A-205ENST00000479712 ZNF76P36508 570 aa8.26□□□□□ -1.09
UPF3A-205ENST00000479712 TNP2Q05952 138 aa8.26□□□□□ -1.09
UPF3A-205ENST00000479712 LAMC2Q13753 1193 aa8.26□□□□□ -1.09
UPF3A-205ENST00000479712 CCDC155Q8N6L0 562 aa8.26□□□□□ -1.09
UPF3A-205ENST00000479712 KIFC2Q96AC6 838 aa8.26□□□□□ -1.09
UPF3A-205ENST00000479712 OSBPL7Q9BZF2 842 aa8.26□□□□□ -1.09
UPF3A-205ENST00000479712 GSX2Q9BZM3 304 aa8.26□□□□□ -1.09
UPF3A-205ENST00000479712 SENP2Q9HC62 589 aa8.26□□□□□ -1.09
UPF3A-205ENST00000479712 SUPT6HQ7KZ85 1726 aaKnown RBP8.26□□□□□ -1.09
UPF3A-205ENST00000479712 DISP1Q96F81 1524 aa8.25□□□□□ -1.09
UPF3A-205ENST00000479712 RARAP10276 462 aa8.25□□□□□ -1.09
UPF3A-205ENST00000479712 MAPTP10636 758 aaKnown RBP8.25□□□□□ -1.09
UPF3A-205ENST00000479712 TARSP26639 723 aaKnown RBP8.25□□□□□ -1.09
UPF3A-205ENST00000479712 UBAP2LQ14157 1087 aaKnown RBP8.25□□□□□ -1.09
UPF3A-205ENST00000479712 METTL16Q86W50 562 aaKnown RBP8.25□□□□□ -1.09
UPF3A-205ENST00000479712 NT5DC4Q86YG4 428 aa8.25□□□□□ -1.09
UPF3A-205ENST00000479712 TRIM22Q8IYM9 498 aa8.25□□□□□ -1.09
UPF3A-205ENST00000479712 PNMA5Q96PV4 448 aa8.25□□□□□ -1.09
UPF3A-205ENST00000479712 STRN4Q9NRL3 753 aa8.25□□□□□ -1.09
UPF3A-205ENST00000479712 TCOF1Q13428 1488 aaKnown RBP8.25□□□□□ -1.09
UPF3A-205ENST00000479712 PHF20L1A8MW92 1017 aa8.24□□□□□ -1.09
UPF3A-205ENST00000479712 CYP2E1P05181 493 aaPredicted RBP8.24□□□□□ -1.09
UPF3A-205ENST00000479712 RXRBP28702 533 aa8.24□□□□□ -1.09
UPF3A-205ENST00000479712 VEGFBP49765 207 aa8.24□□□□□ -1.09
UPF3A-205ENST00000479712 DBN1Q16643 649 aa8.24□□□□□ -1.09
UPF3A-205ENST00000479712 SRCIN1Q9C0H9 1055 aa8.24□□□□□ -1.09
UPF3A-205ENST00000479712 CUEDC1Q9NWM3 386 aaPredicted RBP8.24□□□□□ -1.09
UPF3A-205ENST00000479712 MARK1Q9P0L2 795 aa8.24□□□□□ -1.09
UPF3A-205ENST00000479712 KANSL3Q9P2N6 904 aa8.24□□□□□ -1.09
UPF3A-205ENST00000479712 FAM8A1Q9UBU6 413 aa8.24□□□□□ -1.09
UPF3A-205ENST00000479712 ABCA9Q8IUA7 1624 aa8.24□□□□□ -1.09
UPF3A-205ENST00000479712 RNF17Q9BXT8 1623 aaKnown RBP8.23□□□□□ -1.09
UPF3A-205ENST00000479712 TERTO14746 1132 aaKnown RBP8.23□□□□□ -1.09
UPF3A-205ENST00000479712 BNIP3LO60238 219 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 MMP20O60882 483 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 USP17L7P0C7H9 530 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 NFKB1P19838 968 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 NXPE4Q6UWF7 544 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 OR13H1Q8NG92 308 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 ABHD17AQ96GS6 310 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 BCO2Q9BYV7 579 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 NDFIP2Q9NV92 336 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 ZMYM4Q5VZL5 1548 aa8.23□□□□□ -1.09
UPF3A-205ENST00000479712 FHOD3Q2V2M9 1422 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 EDN3P14138 238 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 SNRPBP14678 240 aaKnown RBP8.22□□□□□ -1.09
UPF3A-205ENST00000479712 RAD51AP2Q09MP3 1159 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 SPEM2Q0P670 501 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 GRM2Q14416 872 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 GRIN2CQ14957 1233 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 NAALADL2Q58DX5 795 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 ZNF837Q96EG3 531 aaPredicted RBP8.22□□□□□ -1.09
UPF3A-205ENST00000479712 GMCL1Q96IK5 515 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 TRIM47Q96LD4 638 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 SUV39H2Q9H5I1 410 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 ZFATQ9P243 1243 aa8.22□□□□□ -1.09
UPF3A-205ENST00000479712 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.22□□□□□ -1.09
UPF3A-205ENST00000479712 HECW1Q76N89 1606 aa8.21□□□□□ -1.09
UPF3A-205ENST00000479712 PLA2R1Q13018 1463 aa8.21□□□□□ -1.09
UPF3A-205ENST00000479712 RAPGEF2Q9Y4G8 1499 aa8.21□□□□□ -1.09
UPF3A-205ENST00000479712 PSAPP07602 524 aa8.21□□□□□ -1.1
UPF3A-205ENST00000479712 CD33P20138 364 aa8.21□□□□□ -1.1
UPF3A-205ENST00000479712 ITGA6P23229 1130 aa8.21□□□□□ -1.1
UPF3A-205ENST00000479712 ZNF772Q68DY9 489 aaPredicted RBP8.21□□□□□ -1.1
UPF3A-205ENST00000479712 EFCC1Q9HA90 598 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms