RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 MYD88Q99836 296 aa8.95□□□□□ -0.98
HDAC1-204ENST00000471488 WTIPA6NIX2 430 aaPredicted RBP8.94□□□□□ -0.98
HDAC1-204ENST00000471488 H0YGN5 161 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 ATP2B4P23634 1241 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 SLC9C1Q4G0N8 1177 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 OTUD7BQ6GQQ9 843 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 APOBEC3FQ8IUX4 373 aaKnown RBP8.94□□□□□ -0.98
HDAC1-204ENST00000471488 DPF3Q92784 378 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 CLMNQ96JQ2 1002 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 PLEKHF1Q96S99 279 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 VEZTQ9HBM0 779 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 PODXL2Q9NZ53 605 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 XDHP47989 1333 aa8.94□□□□□ -0.98
HDAC1-204ENST00000471488 F8W031 263 aaPredicted RBP8.93□□□□□ -0.98
HDAC1-204ENST00000471488 IGF2BP3O00425 579 aaKnown RBP eCLIP8.93□□□□□ -0.98
HDAC1-204ENST00000471488 HSP90B1P14625 803 aaKnown RBP8.93□□□□□ -0.98
HDAC1-204ENST00000471488 SP3Q02447 781 aa8.93□□□□□ -0.98
HDAC1-204ENST00000471488 GOLGA2Q08379 1002 aa8.93□□□□□ -0.98
HDAC1-204ENST00000471488 CRHR2Q13324 411 aa8.93□□□□□ -0.98
HDAC1-204ENST00000471488 NOM1Q5C9Z4 860 aaKnown RBP8.93□□□□□ -0.98
HDAC1-204ENST00000471488 PODNQ7Z5L7 613 aa8.93□□□□□ -0.98
HDAC1-204ENST00000471488 NBPF11Q86T75 865 aa8.93□□□□□ -0.98
HDAC1-204ENST00000471488 CCDC146Q8IYE0 955 aa8.93□□□□□ -0.98
HDAC1-204ENST00000471488 GMLQ99445 158 aa8.93□□□□□ -0.98
HDAC1-204ENST00000471488 ISCA1Q9BUE6 129 aa8.93□□□□□ -0.98
HDAC1-204ENST00000471488 MKI67P46013 3256 aaKnown RBP8.92□□□□□ -0.98
HDAC1-204ENST00000471488 CLRN2A0PK11 232 aa8.92□□□□□ -0.98
HDAC1-204ENST00000471488 PPP1R12BO60237 982 aaPredicted RBP8.92□□□□□ -0.98
HDAC1-204ENST00000471488 PDE8AO60658 829 aa8.92□□□□□ -0.98
HDAC1-204ENST00000471488 KCNJ4P48050 445 aa8.92□□□□□ -0.98
HDAC1-204ENST00000471488 RBM5P52756 815 aaKnown RBP eCLIP8.92□□□□□ -0.98
HDAC1-204ENST00000471488 INHBEP58166 350 aa8.92□□□□□ -0.98
HDAC1-204ENST00000471488 GTF2IP78347 998 aa8.92□□□□□ -0.98
HDAC1-204ENST00000471488 LMOD3Q0VAK6 560 aa8.92□□□□□ -0.98
HDAC1-204ENST00000471488 DACT2Q5SW24 774 aa8.92□□□□□ -0.98
HDAC1-204ENST00000471488 ZBTB38Q8NAP3 1195 aaPredicted RBP8.92□□□□□ -0.98
HDAC1-204ENST00000471488 WNK4Q96J92 1243 aa8.92□□□□□ -0.98
HDAC1-204ENST00000471488 DBF4Q9UBU7 674 aaPredicted RBP8.92□□□□□ -0.98
HDAC1-204ENST00000471488 DLGAP5Q15398 846 aa8.91□□□□□ -0.98
HDAC1-204ENST00000471488 TTLL5Q6EMB2 1281 aa8.91□□□□□ -0.98
HDAC1-204ENST00000471488 SH3TC2Q8TF17 1288 aa8.91□□□□□ -0.98
HDAC1-204ENST00000471488 CDC5LQ99459 802 aaKnown RBP8.91□□□□□ -0.98
HDAC1-204ENST00000471488 DEFB129Q9H1M3 183 aa8.91□□□□□ -0.98
HDAC1-204ENST00000471488 ELP3Q9H9T3 547 aa8.91□□□□□ -0.98
HDAC1-204ENST00000471488 HYPKQ9NX55 129 aa8.91□□□□□ -0.98
HDAC1-204ENST00000471488 PTCH2Q9Y6C5 1203 aa8.91□□□□□ -0.98
HDAC1-204ENST00000471488 MYO3BQ8WXR4 1341 aa8.9□□□□□ -0.98
HDAC1-204ENST00000471488 ELL2O00472 640 aaPredicted RBP8.9□□□□□ -0.98
HDAC1-204ENST00000471488 MYO1BO43795 1136 aa8.9□□□□□ -0.98
HDAC1-204ENST00000471488 ZBTB48P10074 688 aaPredicted RBP8.9□□□□□ -0.98
HDAC1-204ENST00000471488 TMPOP42166 694 aaKnown RBP8.9□□□□□ -0.98
HDAC1-204ENST00000471488 IREB2P48200 963 aaKnown RBP8.9□□□□□ -0.98
HDAC1-204ENST00000471488 ARHGEF6Q15052 776 aa8.9□□□□□ -0.98
HDAC1-204ENST00000471488 LDLRAD1Q5T700 205 aa8.9□□□□□ -0.98
HDAC1-204ENST00000471488 ARMC5Q96C12 935 aa8.9□□□□□ -0.98
HDAC1-204ENST00000471488 CFHR5Q9BXR6 569 aa8.9□□□□□ -0.98
HDAC1-204ENST00000471488 CWC25Q9NXE8 425 aaPredicted RBP8.9□□□□□ -0.98
HDAC1-204ENST00000471488 JAG2Q9Y219 1238 aa8.9□□□□□ -0.98
HDAC1-204ENST00000471488 CENPFP49454 3210 aa8.9□□□□□ -0.98
HDAC1-204ENST00000471488 ZNF609O15014 1411 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 CCT4P50991 539 aaKnown RBP8.89□□□□□ -0.99
HDAC1-204ENST00000471488 KIF22Q14807 665 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 TAF1CQ15572 869 aaPredicted RBP8.89□□□□□ -0.99
HDAC1-204ENST00000471488 SUPT20HL1Q3ZLR7 823 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 STRIP1Q5VSL9 837 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 DUSP27Q5VZP5 1158 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 OPTNQ96CV9 577 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 ZNF333Q96JL9 665 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 COA1Q9GZY4 146 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 PHAXQ9H814 394 aaKnown RBP8.89□□□□□ -0.99
HDAC1-204ENST00000471488 RBM27Q9P2N5 1060 aaKnown RBP8.89□□□□□ -0.99
HDAC1-204ENST00000471488 MINPP1Q9UNW1 487 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 PCDHAC2Q9Y5I4 1007 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 SPEF2Q9C093 1822 aa8.89□□□□□ -0.99
HDAC1-204ENST00000471488 MED23Q9ULK4 1368 aa8.88□□□□□ -0.99
HDAC1-204ENST00000471488 WDHD1O75717 1129 aaPredicted RBP8.88□□□□□ -0.99
HDAC1-204ENST00000471488 KLRK1P26718 216 aa8.88□□□□□ -0.99
HDAC1-204ENST00000471488 GJA5P36382 358 aa8.88□□□□□ -0.99
HDAC1-204ENST00000471488 IGHMBP2P38935 993 aaKnown RBP8.88□□□□□ -0.99
HDAC1-204ENST00000471488 NBPF12Q5TAG4 269 aaPredicted RBP8.88□□□□□ -0.99
HDAC1-204ENST00000471488 TXNRD3Q86VQ6 643 aa8.88□□□□□ -0.99
HDAC1-204ENST00000471488 GREM2Q9H772 168 aa8.88□□□□□ -0.99
HDAC1-204ENST00000471488 ZFYVE28Q9HCC9 887 aa8.88□□□□□ -0.99
HDAC1-204ENST00000471488 BABAM1Q9NWV8 329 aa8.88□□□□□ -0.99
HDAC1-204ENST00000471488 BIN2Q9UBW5 565 aaPredicted RBP8.88□□□□□ -0.99
HDAC1-204ENST00000471488 PSME4Q14997 1843 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 CCL15-CCL14A0A0B4J2E2 113 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 PCCAP05165 728 aaPredicted RBP8.87□□□□□ -0.99
HDAC1-204ENST00000471488 CTSWP56202 376 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 CAP1Q01518 475 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 CCL15Q16663 113 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 CFAP100Q494V2 611 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 ANKRD13AQ8IZ07 590 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 CCDC191Q8NCU4 936 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 MPHOSPH8Q99549 860 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 PTPN18Q99952 460 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 HTTP42858 3142 aa8.87□□□□□ -0.99
HDAC1-204ENST00000471488 KIAA0100Q14667 2235 aaKnown RBP8.86□□□□□ -0.99
HDAC1-204ENST00000471488 ZNF804BA4D1E1 1349 aa8.86□□□□□ -0.99
HDAC1-204ENST00000471488 CHL1O00533 1208 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms