RNA–Protein interactions for RNA: ENST00000465877.1

COL5A1-206, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-206ENST00000465877 LRRC24Q50LG9 513 aa16.13■□□□□ 0.17
COL5A1-206ENST00000465877 PODNQ7Z5L7 613 aa16.13■□□□□ 0.17
COL5A1-206ENST00000465877 PNMA8AQ86V59 439 aaPredicted RBP16.13■□□□□ 0.17
COL5A1-206ENST00000465877 ZBTB12Q9Y330 459 aaPredicted RBP16.13■□□□□ 0.17
COL5A1-206ENST00000465877 RIPOR2Q9Y4F9 1068 aa16.13■□□□□ 0.17
COL5A1-206ENST00000465877 PLIN1O60240 522 aa16.12■□□□□ 0.17
COL5A1-206ENST00000465877 RPS12P25398 132 aaKnown RBP16.12■□□□□ 0.17
COL5A1-206ENST00000465877 PTPN12Q05209 780 aaKnown RBP16.12■□□□□ 0.17
COL5A1-206ENST00000465877 CHADLQ6NUI6 762 aa16.12■□□□□ 0.17
COL5A1-206ENST00000465877 ITPRIPQ8IWB1 547 aa16.12■□□□□ 0.17
COL5A1-206ENST00000465877 COA1Q9GZY4 146 aa16.12■□□□□ 0.17
COL5A1-206ENST00000465877 ADARB2Q9NS39 739 aaKnown RBP16.12■□□□□ 0.17
COL5A1-206ENST00000465877 RCAN3Q9UKA8 241 aa16.12■□□□□ 0.17
COL5A1-206ENST00000465877 SHTN1A0MZ66 631 aa16.11■□□□□ 0.17
COL5A1-206ENST00000465877 METTL24Q5JXM2 366 aa16.11■□□□□ 0.17
COL5A1-206ENST00000465877 C15orf52Q6ZUT6 534 aaKnown RBP16.11■□□□□ 0.17
COL5A1-206ENST00000465877 USP50Q70EL3 339 aaPredicted RBP16.11■□□□□ 0.17
COL5A1-206ENST00000465877 MICALL2Q8IY33 904 aa16.11■□□□□ 0.17
COL5A1-206ENST00000465877 VGLL2Q8N8G2 317 aa16.11■□□□□ 0.17
COL5A1-206ENST00000465877 YTHDC1Q96MU7 727 aaKnown RBP16.11■□□□□ 0.17
COL5A1-206ENST00000465877 POLR2AP24928 1970 aaKnown RBP16.1■□□□□ 0.17
COL5A1-206ENST00000465877 USP17L3A6NCW0 530 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 USP17L4A6NCW7 530 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 EYA2O00167 538 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 GNAI2P04899 355 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 VIL1P09327 827 aaKnown RBP16.1■□□□□ 0.17
COL5A1-206ENST00000465877 MTX1Q13505 466 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 UBE4AQ14139 1066 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 RSBN1LQ6PCB5 846 aaPredicted RBP16.1■□□□□ 0.17
COL5A1-206ENST00000465877 USP17L1Q7RTZ2 530 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 ZNF804AQ7Z570 1209 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 TRPM4Q8TD43 1214 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 DPF2Q92785 391 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 SIL1Q9H173 461 aa16.1■□□□□ 0.17
COL5A1-206ENST00000465877 PANK1Q8TE04 598 aa16.09■□□□□ 0.17
COL5A1-206ENST00000465877 FBXW7Q969H0 707 aa16.09■□□□□ 0.17
COL5A1-206ENST00000465877 CNOT7Q9UIV1 285 aaKnown RBP16.09■□□□□ 0.17
COL5A1-206ENST00000465877 CLEC11AQ9Y240 323 aa16.09■□□□□ 0.17
COL5A1-206ENST00000465877 SRGAP3O43295 1099 aa16.08■□□□□ 0.16
COL5A1-206ENST00000465877 APLP1P51693 650 aa16.08■□□□□ 0.16
COL5A1-206ENST00000465877 DACT2Q5SW24 774 aa16.08■□□□□ 0.16
COL5A1-206ENST00000465877 AGBL3Q8NEM8 1001 aa16.08■□□□□ 0.16
COL5A1-206ENST00000465877 CD209Q9NNX6 404 aa16.08■□□□□ 0.16
COL5A1-206ENST00000465877 FBXO3Q9UK99 471 aa16.08■□□□□ 0.16
COL5A1-206ENST00000465877 PA2G4Q9UQ80 394 aaKnown RBP16.08■□□□□ 0.16
COL5A1-206ENST00000465877 MYO3BQ8WXR4 1341 aa16.08■□□□□ 0.16
COL5A1-206ENST00000465877 H7C1D1 291 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 CIAO1O76071 339 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 PDE8BO95263 885 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 MS4A1P11836 297 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 PUM3Q15397 648 aaKnown RBP16.07■□□□□ 0.16
COL5A1-206ENST00000465877 STRIP1Q5VSL9 837 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 MAP1SQ66K74 1059 aaPredicted RBP16.07■□□□□ 0.16
COL5A1-206ENST00000465877 ATG9AQ7Z3C6 839 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 C1orf115Q9H7X2 142 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 COPRSQ9NQ92 184 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 PASKQ96RG2 1323 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 PCNTO95613 3336 aa16.07■□□□□ 0.16
COL5A1-206ENST00000465877 EGFRP00533 1210 aa16.06■□□□□ 0.16
COL5A1-206ENST00000465877 IL1R1P14778 569 aa16.06■□□□□ 0.16
COL5A1-206ENST00000465877 SAMD7Q7Z3H4 446 aa16.06■□□□□ 0.16
COL5A1-206ENST00000465877 GMLQ99445 158 aa16.06■□□□□ 0.16
COL5A1-206ENST00000465877 MXD3Q9BW11 206 aa16.06■□□□□ 0.16
COL5A1-206ENST00000465877 PNMA6EA0A0J9YXQ4 647 aa16.05■□□□□ 0.16
COL5A1-206ENST00000465877 FGFR2P21802 821 aa16.05■□□□□ 0.16
COL5A1-206ENST00000465877 IL15P40933 162 aaPredicted RBP16.05■□□□□ 0.16
COL5A1-206ENST00000465877 GYG1P46976 350 aa16.05■□□□□ 0.16
COL5A1-206ENST00000465877 GTF2IP78347 998 aa16.05■□□□□ 0.16
COL5A1-206ENST00000465877 KIF4BQ2VIQ3 1234 aa16.05■□□□□ 0.16
COL5A1-206ENST00000465877 TBC1D10BQ4KMP7 808 aaPredicted RBP16.05■□□□□ 0.16
COL5A1-206ENST00000465877 COL1A1P02452 1464 aaPredicted RBP16.04■□□□□ 0.16
COL5A1-206ENST00000465877 ZBTB7BO15156 539 aaPredicted RBP16.04■□□□□ 0.16
COL5A1-206ENST00000465877 HIBADHP31937 336 aaKnown RBP16.04■□□□□ 0.16
COL5A1-206ENST00000465877 HIRAP54198 1017 aaPredicted RBP16.04■□□□□ 0.16
COL5A1-206ENST00000465877 ZNF280AP59817 542 aaPredicted RBP16.04■□□□□ 0.16
COL5A1-206ENST00000465877 MVPQ14764 893 aaKnown RBP16.04■□□□□ 0.16
COL5A1-206ENST00000465877 TTLL5Q6EMB2 1281 aa16.04■□□□□ 0.16
COL5A1-206ENST00000465877 CNTROBQ8N137 903 aa16.04■□□□□ 0.16
COL5A1-206ENST00000465877 FAM84BQ96KN1 310 aaPredicted RBP16.04■□□□□ 0.16
COL5A1-206ENST00000465877 MAST2Q6P0Q8 1798 aa16.04■□□□□ 0.16
COL5A1-206ENST00000465877 ITGBL1O95965 494 aaPredicted RBP16.03■□□□□ 0.16
COL5A1-206ENST00000465877 USP17L8P0C7I0 530 aa16.03■□□□□ 0.16
COL5A1-206ENST00000465877 SLC5A1P13866 664 aa16.03■□□□□ 0.16
COL5A1-206ENST00000465877 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.03■□□□□ 0.16
COL5A1-206ENST00000465877 LPIN2Q92539 896 aa16.03■□□□□ 0.16
COL5A1-206ENST00000465877 THSD7BQ9C0I4 1608 aa16.03■□□□□ 0.16
COL5A1-206ENST00000465877 IFIT1P09914 478 aaKnown RBP16.02■□□□□ 0.16
COL5A1-206ENST00000465877 HTRA3P83110 453 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 ATP2B3Q16720 1220 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 CAVIN4Q5BKX8 364 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 VPS37DQ86XT2 251 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 KIAA0825Q8IV33 1275 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 CERS5Q8N5B7 392 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 TDRD7Q8NHU6 1098 aaKnown RBP16.02■□□□□ 0.16
COL5A1-206ENST00000465877 ZC3H15Q8WU90 426 aaKnown RBP16.02■□□□□ 0.16
COL5A1-206ENST00000465877 MYOZ2Q9NPC6 264 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 DDX19BQ9UMR2 479 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 JAG2Q9Y219 1238 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 COG6Q9Y2V7 657 aa16.02■□□□□ 0.16
COL5A1-206ENST00000465877 FAM205AQ6ZU69 1335 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms