RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 STK32BQ9NY57 414 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 COL5A2P05997 1499 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 AKAP17AQ02040 695 aaKnown RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 TCIRG1Q13488 830 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 DNAJC10Q8IXB1 793 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 CCDC148Q8NFR7 591 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 TRERF1Q96PN7 1200 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 MPHOSPH8Q99549 860 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 TBC1D2BQ9UPU7 963 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 PA2G4Q9UQ80 394 aaKnown RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 CTDP1Q9Y5B0 961 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 PHRF1Q9P1Y6 1649 aaKnown RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 DHX16O60231 1041 aaKnown RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 DZIP3Q86Y13 1208 aaKnown RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 AMOTL1Q8IY63 956 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 BOLA2Q9H3K6 86 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 RAD50Q92878 1312 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 URI1O94763 535 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 PRIM1P49642 420 aaKnown RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 STK38Q15208 465 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 FBXO3Q9UK99 471 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 LMO7Q8WWI1 1683 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 IGHMBP2P38935 993 aaKnown RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 METTL24Q5JXM2 366 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 TSHZ3Q63HK5 1081 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 COPRSQ9NQ92 184 aa7.17□□□□□ -1.26
VPS13D-202ENST00000460333 RBM28Q9NW13 759 aaKnown RBP7.17□□□□□ -1.26
VPS13D-202ENST00000460333 KDM6AO15550 1401 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-202ENST00000460333 TRPM3Q9HCF6 1732 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-202ENST00000460333 MNAT1P51948 309 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 ERO1AQ96HE7 468 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 RBM27Q9P2N5 1060 aaKnown RBP7.16□□□□□ -1.26
VPS13D-202ENST00000460333 TRPC5Q9UL62 973 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-202ENST00000460333 NF2P35240 595 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 PARP10Q53GL7 1025 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 CCDC83Q8IWF9 413 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 FAM200AQ8TCP9 573 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 PDRG1Q9NUG6 133 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 FAM177BA6PVY3 158 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 ERLIN2O94905 339 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 TUBBP07437 444 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 IFIT1P09914 478 aaKnown RBP7.16□□□□□ -1.26
VPS13D-202ENST00000460333 CT47A1Q5JQC4 288 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-202ENST00000460333 ARFGAP3Q9NP61 516 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 KIF5CO60282 957 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 GPTP24298 496 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 STX1AQ16623 288 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 PIGBQ92521 554 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 CCDC87Q9NVE4 849 aa7.16□□□□□ -1.26
VPS13D-202ENST00000460333 GNL3LQ9NVN8 582 aaKnown RBP7.16□□□□□ -1.26
VPS13D-202ENST00000460333 ZNHIT6Q9NWK9 470 aaKnown RBP7.16□□□□□ -1.26
VPS13D-202ENST00000460333 ALS2Q96Q42 1657 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 EYA2O00167 538 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 WASHC4Q2M389 1173 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.15□□□□□ -1.26
VPS13D-202ENST00000460333 LUZP1Q86V48 1076 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 ACSBG1Q96GR2 724 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 ATG3Q9NT62 314 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 CTNNA3Q9UI47 895 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 MAP3K15Q6ZN16 1313 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 PCCAP05165 728 aaPredicted RBP7.15□□□□□ -1.26
VPS13D-202ENST00000460333 IL6STP40189 918 aaPredicted RBP7.15□□□□□ -1.26
VPS13D-202ENST00000460333 LDHAL6AQ6ZMR3 332 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 JARID2Q92833 1246 aaPredicted RBP7.15□□□□□ -1.26
VPS13D-202ENST00000460333 HMG20BQ9P0W2 317 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 ASAP1Q9ULH1 1129 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 UTYO14607 1347 aa7.15□□□□□ -1.26
VPS13D-202ENST00000460333 TDO2P48775 406 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 TRDNQ13061 729 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 TNNI3KQ59H18 835 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 TTLL7Q6ZT98 887 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 UTP14AQ9BVJ6 771 aaKnown RBP7.15□□□□□ -1.27
VPS13D-202ENST00000460333 LUC7LQ9NQ29 371 aaKnown RBP7.15□□□□□ -1.27
VPS13D-202ENST00000460333 U3KPZ7 1027 aaPredicted RBP7.15□□□□□ -1.27
VPS13D-202ENST00000460333 FPGT-TNNI3KV9GXZ4 949 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 KAT6BQ8WYB5 2073 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 LRRC37A3O60309 1634 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 IGKV5-2P06315 115 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 TFCP2Q12800 502 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 CCDC152Q4G0S7 254 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 UNC5CLQ8IV45 518 aa7.15□□□□□ -1.27
VPS13D-202ENST00000460333 ERVV-1B6SEH8 477 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 KDM4AO75164 1064 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 ME1P48163 572 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 PDIA6Q15084 440 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 TTF1Q15361 905 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-202ENST00000460333 KIAA1328Q86T90 577 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 CCAR1Q8IX12 1150 aaKnown RBP7.14□□□□□ -1.27
VPS13D-202ENST00000460333 GPR108Q9NPR9 543 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 H7C1W4 665 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 IRS4O14654 1257 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-202ENST00000460333 ZFYP08048 801 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-202ENST00000460333 SLC5A1P13866 664 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 ARHGAP29Q52LW3 1261 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 BLOC1S2Q6QNY1 142 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 GIGYF2Q6Y7W6 1299 aaKnown RBP7.14□□□□□ -1.27
VPS13D-202ENST00000460333 PAXIP1Q6ZW49 1069 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-202ENST00000460333 ZBTB38Q8NAP3 1195 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-202ENST00000460333 CDC5LQ99459 802 aaKnown RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms