RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TM4SF5O14894 197 aa7.7□□□□□ -1.18
VPS29-202ENST00000447578 SMNDC1O75940 238 aaKnown RBP eCLIP7.7□□□□□ -1.186e-11■■■■□ 20.7
VPS29-202ENST00000447578 CDC27P30260 824 aa7.7□□□□□ -1.18
VPS29-202ENST00000447578 Q6ZS46 218 aa7.7□□□□□ -1.18
VPS29-202ENST00000447578 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.7□□□□□ -1.18
VPS29-202ENST00000447578 TMEM63CQ9P1W3 806 aa7.7□□□□□ -1.18
VPS29-202ENST00000447578 CD68P34810 354 aaPredicted RBP7.69□□□□□ -1.18
VPS29-202ENST00000447578 NCAPG2Q86XI2 1143 aa7.69□□□□□ -1.18
VPS29-202ENST00000447578 CACTIN-AS1Q8N1I8 211 aa7.69□□□□□ -1.18
VPS29-202ENST00000447578 NUDT16Q96DE0 195 aaKnown RBP7.69□□□□□ -1.18
VPS29-202ENST00000447578 DDX3YO15523 660 aaKnown RBP7.68□□□□□ -1.18
VPS29-202ENST00000447578 KIF4AO95239 1232 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 EPHA1P21709 976 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 ATP2B4P23634 1241 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 SSTR4P31391 388 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 JAG1P78504 1218 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 ACAD11Q709F0 780 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 CEP120Q8N960 986 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 POP1Q99575 1024 aaKnown RBP7.68□□□□□ -1.18
VPS29-202ENST00000447578 PBX4Q9BYU1 374 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 ELP3Q9H9T3 547 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 CNTN3Q9P232 1028 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 KANSL3Q9P2N6 904 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 RAXQ9Y2V3 346 aa7.68□□□□□ -1.18
VPS29-202ENST00000447578 FSCN2O14926 492 aa7.67□□□□□ -1.18
VPS29-202ENST00000447578 ACPPP15309 386 aa7.67□□□□□ -1.18
VPS29-202ENST00000447578 ABTB2Q8N961 1025 aa7.67□□□□□ -1.18
VPS29-202ENST00000447578 DCAF11Q8TEB1 546 aa7.67□□□□□ -1.18
VPS29-202ENST00000447578 PBXIP1Q96AQ6 731 aa7.67□□□□□ -1.18
VPS29-202ENST00000447578 KIAA1211Q6ZU35 1233 aa7.66□□□□□ -1.18
VPS29-202ENST00000447578 ARMC10Q8N2F6 343 aa7.66□□□□□ -1.18
VPS29-202ENST00000447578 KLHDC7BQ96G42 594 aa7.66□□□□□ -1.18
VPS29-202ENST00000447578 STOML1Q9UBI4 398 aa7.66□□□□□ -1.18
VPS29-202ENST00000447578 A6NHS1 94 aa7.65□□□□□ -1.18
VPS29-202ENST00000447578 ADAM11O75078 769 aa7.65□□□□□ -1.18
VPS29-202ENST00000447578 TRPA1O75762 1119 aa7.65□□□□□ -1.18
VPS29-202ENST00000447578 ZNF438Q7Z4V0 828 aa7.65□□□□□ -1.18
VPS29-202ENST00000447578 FOXD4L4Q8WXT5 416 aaPredicted RBP7.65□□□□□ -1.18
VPS29-202ENST00000447578 EDEM1Q92611 657 aa7.65□□□□□ -1.18
VPS29-202ENST00000447578 ZMYND15Q9H091 742 aa7.65□□□□□ -1.18
VPS29-202ENST00000447578 MED26O95402 600 aa7.64□□□□□ -1.19
VPS29-202ENST00000447578 DUOXA2Q1HG44 320 aa7.64□□□□□ -1.19
VPS29-202ENST00000447578 PDE12Q6L8Q7 609 aaKnown RBP7.64□□□□□ -1.19
VPS29-202ENST00000447578 C1orf127Q8N9H9 656 aa7.64□□□□□ -1.19
VPS29-202ENST00000447578 UBASH3BQ8TF42 649 aa7.64□□□□□ -1.19
VPS29-202ENST00000447578 GGNBP2Q9H3C7 697 aa7.64□□□□□ -1.19
VPS29-202ENST00000447578 TGFB1P01137 390 aa7.63□□□□□ -1.19
VPS29-202ENST00000447578 IGLV1-40P01703 118 aa7.63□□□□□ -1.19
VPS29-202ENST00000447578 PTPRAP18433 802 aa7.63□□□□□ -1.19
VPS29-202ENST00000447578 DNM1Q05193 864 aaKnown RBP7.63□□□□□ -1.19
VPS29-202ENST00000447578 FAM117BQ6P1L5 589 aa7.63□□□□□ -1.19
VPS29-202ENST00000447578 SLC51AQ86UW1 340 aa7.63□□□□□ -1.19
VPS29-202ENST00000447578 KLHL23Q8NBE8 558 aa7.63□□□□□ -1.19
VPS29-202ENST00000447578 CCDC97Q96F63 343 aaPredicted RBP7.63□□□□□ -1.19
VPS29-202ENST00000447578 HHIPQ96QV1 700 aa7.63□□□□□ -1.19
VPS29-202ENST00000447578 ADAM19Q9H013 955 aa7.63□□□□□ -1.19
VPS29-202ENST00000447578 SALL4Q9UJQ4 1053 aa7.63□□□□□ -1.19
VPS29-202ENST00000447578 ARID3CA6NKF2 412 aa7.62□□□□□ -1.19
VPS29-202ENST00000447578 DHX15O43143 795 aaKnown RBP7.62□□□□□ -1.19
VPS29-202ENST00000447578 CD97P48960 835 aa7.62□□□□□ -1.19
VPS29-202ENST00000447578 UTP4Q969X6 686 aaKnown RBP7.62□□□□□ -1.19
VPS29-202ENST00000447578 FAM46AQ96IP4 442 aaKnown RBP7.62□□□□□ -1.19
VPS29-202ENST00000447578 CEP41Q9BYV8 373 aa7.62□□□□□ -1.19
VPS29-202ENST00000447578 SEC31BQ9NQW1 1179 aa7.62□□□□□ -1.19
VPS29-202ENST00000447578 HMX2A2RU54 273 aa7.61□□□□□ -1.19
VPS29-202ENST00000447578 NFKBIEO00221 500 aa7.61□□□□□ -1.19
VPS29-202ENST00000447578 CES1P23141 567 aa7.61□□□□□ -1.19
VPS29-202ENST00000447578 C8orf34Q49A92 452 aa7.61□□□□□ -1.19
VPS29-202ENST00000447578 HGSNATQ68CP4 663 aa7.61□□□□□ -1.19
VPS29-202ENST00000447578 TRIM42Q8IWZ5 723 aa7.61□□□□□ -1.19
VPS29-202ENST00000447578 H3BRJ5 948 aa7.6□□□□□ -1.19
VPS29-202ENST00000447578 PDGFAP04085 211 aa7.6□□□□□ -1.19
VPS29-202ENST00000447578 NLRP12P59046 1061 aa7.6□□□□□ -1.19
VPS29-202ENST00000447578 MTMR3Q13615 1198 aa7.6□□□□□ -1.19
VPS29-202ENST00000447578 HELQQ8TDG4 1101 aa7.6□□□□□ -1.19
VPS29-202ENST00000447578 SLC7A3Q8WY07 619 aa7.6□□□□□ -1.19
VPS29-202ENST00000447578 C7orf69Q9H7B7 122 aa7.6□□□□□ -1.19
VPS29-202ENST00000447578 DZANK1Q9NVP4 752 aa7.6□□□□□ -1.19
VPS29-202ENST00000447578 SERPINA10Q9UK55 444 aa7.6□□□□□ -1.19
VPS29-202ENST00000447578 FAM177BA6PVY3 158 aa7.59□□□□□ -1.19
VPS29-202ENST00000447578 MPSTP25325 297 aa7.59□□□□□ -1.19
VPS29-202ENST00000447578 NOM1Q5C9Z4 860 aaKnown RBP7.59□□□□□ -1.19
VPS29-202ENST00000447578 XKR5Q6UX68 686 aa7.59□□□□□ -1.19
VPS29-202ENST00000447578 ZDHHC13Q8IUH4 622 aa7.59□□□□□ -1.19
VPS29-202ENST00000447578 CHRDQ9H2X0 955 aa7.59□□□□□ -1.19
VPS29-202ENST00000447578 OAS3Q9Y6K5 1087 aaKnown RBP7.59□□□□□ -1.19
VPS29-202ENST00000447578 PDE2AO00408 941 aaPredicted RBP7.58□□□□□ -1.2
VPS29-202ENST00000447578 GSC2O15499 205 aa7.58□□□□□ -1.2
VPS29-202ENST00000447578 EIF1AXP47813 144 aaKnown RBP7.58□□□□□ -1.2
VPS29-202ENST00000447578 CABP4P57796 275 aa7.58□□□□□ -1.2
VPS29-202ENST00000447578 NFIAQ12857 509 aa7.58□□□□□ -1.2
VPS29-202ENST00000447578 GTF3C2Q8WUA4 911 aaPredicted RBP7.58□□□□□ -1.2
VPS29-202ENST00000447578 MYRFLQ96LU7 910 aa7.58□□□□□ -1.2
VPS29-202ENST00000447578 RPLP1P05386 114 aaKnown RBP7.57□□□□□ -1.2
VPS29-202ENST00000447578 MZF1P28698 734 aaPredicted RBP7.57□□□□□ -1.2
VPS29-202ENST00000447578 PREPP48147 710 aa7.57□□□□□ -1.2
VPS29-202ENST00000447578 GP2P55259 537 aaKnown RBP7.57□□□□□ -1.2
VPS29-202ENST00000447578 PIP4K2BP78356 416 aa7.57□□□□□ -1.2
VPS29-202ENST00000447578 UVSSAQ2YD98 709 aa7.57□□□□□ -1.2
VPS29-202ENST00000447578 POLIQ9UNA4 740 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms