RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 GSPT1P15170 499 aaKnown RBP9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 TXLNAP40222 546 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 IARSP41252 1262 aaKnown RBP9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 HMGN5P82970 282 aaKnown RBP9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 LRRC24Q50LG9 513 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 SLF2Q8IX21 1173 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 ANKRD13AQ8IZ07 590 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 PNPLA6Q8IY17 1366 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 PTPRUQ92729 1446 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 FRMPD1Q5SYB0 1578 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 CCDC171Q6TFL3 1326 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 TPM3P06753 285 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 AK2P54819 239 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 WASF1Q92558 559 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 CDK5RAP3Q96JB5 506 aa9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 NAT10Q9H0A0 1025 aaKnown RBP9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 NOL7Q9UMY1 257 aaKnown RBP9.44□□□□□ -0.9
TMEM39A-202ENST00000438581 BAG4O95429 457 aaKnown RBP9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 CRKLP46109 303 aaKnown RBP9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 METAP2P50579 478 aaKnown RBP eCLIP9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 CATIPQ7Z7H3 387 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 SIRT2Q8IXJ6 389 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 C1orf167Q5SNV9 1468 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 PDE4BQ07343 736 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 PICALMQ13492 652 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 CCDC96Q2M329 555 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 NUP62CLQ9H1M0 184 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 CCDC66A2RUB6 948 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 CCDC192P0DO97 292 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 PUM3Q15397 648 aaKnown RBP9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 SLC26A6Q9BXS9 759 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 CPS1P31327 1500 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 PREX1Q8TCU6 1659 aa9.43□□□□□ -0.9
TMEM39A-202ENST00000438581 TSHZ1Q6ZSZ6 1077 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 SPC24Q8NBT2 197 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 PUS3Q9BZE2 481 aaKnown RBP9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 MAGEB6P1A0A0J9YX57 407 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 SGSM2O43147 1006 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 MBD4O95243 580 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 ZAP70P43403 619 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 BRPF1P55201 1214 aaPredicted RBP9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 WTAPQ15007 396 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 OTUD6BQ8N6M0 293 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 USP31Q70CQ4 1352 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 CDC42BPGQ6DT37 1551 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 PRC1O43663 620 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 SSBP05455 408 aaKnown RBP eCLIP9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 SSRP1Q08945 709 aaKnown RBP9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 USPL1Q5W0Q7 1092 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 GIGYF2Q6Y7W6 1299 aaKnown RBP9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 SCAND2PQ9GZW5 306 aaPredicted RBP9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 ZHX3Q9H4I2 956 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 ERBB4Q15303 1308 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 MAP3K15Q6ZN16 1313 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 TRIM37O94972 964 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 RXRAP19793 462 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 APOBRQ0VD83 1088 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 ZNF804AQ7Z570 1209 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 PDILTQ8N807 584 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 ZBTB38Q8NAP3 1195 aaPredicted RBP9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 MNS1Q8NEH6 495 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 NOC3LQ8WTT2 800 aaKnown RBP9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 GRPEL1Q9HAV7 217 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 MCM9Q9NXL9 1143 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 FAM13BQ9NYF5 915 aa9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 TRPC5Q9UL62 973 aaPredicted RBP9.42□□□□□ -0.9
TMEM39A-202ENST00000438581 ZBTB43O43298 467 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 UFL1O94874 794 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 SMC2O95347 1197 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 KBTBD3Q8NAB2 608 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 CTSWP56202 376 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 MSL1Q68DK7 614 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 HOMER1Q86YM7 354 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 SNX21Q969T3 373 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 ANKRD2Q9GZV1 360 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 GREM2Q9H772 168 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 SEC63Q9UGP8 760 aaKnown RBP9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 PTCH1Q13635 1447 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 KRT18P05783 430 aaKnown RBP9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 HIBADHP31937 336 aaKnown RBP9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 CCAR1Q8IX12 1150 aaKnown RBP9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 ESR2Q92731 530 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 ZKSCAN3Q9BRR0 538 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 PANK2Q9BZ23 570 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 HEG1Q9ULI3 1381 aa9.41□□□□□ -0.9
TMEM39A-202ENST00000438581 LAMC1P11047 1609 aa9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 PCCAP05165 728 aaPredicted RBP9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 NLRP5P59047 1200 aa9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 RPS8P62241 208 aaKnown RBP9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 ZKSCAN8Q15776 578 aaPredicted RBP9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 UNC5CLQ8IV45 518 aa9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 CKAP2LQ8IYA6 745 aa9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 CCAR2Q8N163 923 aaKnown RBP9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 LPIN2Q92539 896 aa9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 KAT14Q9H8E8 782 aa9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 ADGRB1O14514 1584 aa9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 TNS3Q68CZ2 1445 aa9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 LDHBP07195 334 aaKnown RBP9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 ARMT1Q9H993 441 aa9.4□□□□□ -0.9
TMEM39A-202ENST00000438581 DHX8Q14562 1220 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms