RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 NUP153P49790 1475 aaKnown RBP7.39□□□□□ -1.23
CLK1-202ENST00000409403 TIAM1Q13009 1591 aa7.39□□□□□ -1.23
CLK1-202ENST00000409403 EPB42P16452 691 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 TAGLNQ01995 201 aaKnown RBP7.38□□□□□ -1.23
CLK1-202ENST00000409403 TYRO3Q06418 890 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 ANKLE2Q86XL3 938 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 MRRFQ96E11 262 aaKnown RBP7.38□□□□□ -1.23
CLK1-202ENST00000409403 CEP63Q96MT8 703 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 RTCBQ9Y3I0 505 aaKnown RBP7.38□□□□□ -1.23
CLK1-202ENST00000409403 KDM5DQ9BY66 1539 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 FGD1P98174 961 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 ATP7AQ04656 1500 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 EEA1Q15075 1411 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 EFHC2Q5JST6 749 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 SAMD5Q5TGI4 173 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 BRWD3Q6RI45 1802 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 AFAP1Q8N556 730 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 ZNF775Q96BV0 537 aaPredicted RBP7.38□□□□□ -1.23
CLK1-202ENST00000409403 GGNBP2Q9H3C7 697 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 DACH1Q9UI36 760 aa7.38□□□□□ -1.23
CLK1-202ENST00000409403 FNDC3AQ9Y2H6 1198 aaKnown RBP7.38□□□□□ -1.23
CLK1-202ENST00000409403 AHDC1Q5TGY3 1603 aaPredicted RBP7.37□□□□□ -1.23
CLK1-202ENST00000409403 MLH3Q9UHC1 1453 aa7.37□□□□□ -1.23
CLK1-202ENST00000409403 EIF5BO60841 1220 aaKnown RBP7.37□□□□□ -1.23
CLK1-202ENST00000409403 LDHBP07195 334 aaKnown RBP7.37□□□□□ -1.23
CLK1-202ENST00000409403 LBRQ14739 615 aaKnown RBP7.37□□□□□ -1.23
CLK1-202ENST00000409403 CMTR1Q8N1G2 835 aaKnown RBP7.37□□□□□ -1.23
CLK1-202ENST00000409403 KIAA1522Q9P206 1035 aaPredicted RBP7.37□□□□□ -1.23
CLK1-202ENST00000409403 USP20Q9Y2K6 914 aa7.37□□□□□ -1.23
CLK1-202ENST00000409403 UGGT1Q9NYU2 1555 aa7.36□□□□□ -1.23
CLK1-202ENST00000409403 LOC100996750A0A140TA64 210 aa7.36□□□□□ -1.23
CLK1-202ENST00000409403 SOBPA7XYQ1 873 aa7.36□□□□□ -1.23
CLK1-202ENST00000409403 ATP2B2Q01814 1243 aa7.36□□□□□ -1.23
CLK1-202ENST00000409403 PTSQ03393 145 aa7.36□□□□□ -1.23
CLK1-202ENST00000409403 KIFC2Q96AC6 838 aa7.36□□□□□ -1.23
CLK1-202ENST00000409403 KRTAP4-6Q9BYQ5 205 aa7.36□□□□□ -1.23
CLK1-202ENST00000409403 SENP2Q9HC62 589 aa7.36□□□□□ -1.23
CLK1-202ENST00000409403 BLMP54132 1417 aaPredicted RBP7.36□□□□□ -1.23
CLK1-202ENST00000409403 TMEM94Q12767 1356 aa7.35□□□□□ -1.23
CLK1-202ENST00000409403 A6NHS1 94 aa7.35□□□□□ -1.23
CLK1-202ENST00000409403 ENOX2Q16206 610 aaKnown RBP7.35□□□□□ -1.23
CLK1-202ENST00000409403 PDE12Q6L8Q7 609 aaKnown RBP7.35□□□□□ -1.23
CLK1-202ENST00000409403 FIGNL1Q6PIW4 674 aa7.35□□□□□ -1.23
CLK1-202ENST00000409403 RIPOR1Q6ZS17 1223 aa7.35□□□□□ -1.23
CLK1-202ENST00000409403 BRD7Q9NPI1 651 aa7.35□□□□□ -1.23
CLK1-202ENST00000409403 KCNMB2Q9Y691 235 aa7.35□□□□□ -1.23
CLK1-202ENST00000409403 KDM5AP29375 1690 aaKnown RBP7.35□□□□□ -1.23
CLK1-202ENST00000409403 SCAF11Q99590 1463 aaKnown RBP7.35□□□□□ -1.23
CLK1-202ENST00000409403 SLC35F4A4IF30 521 aa7.35□□□□□ -1.23
CLK1-202ENST00000409403 PRPF40AO75400 957 aaKnown RBP7.35□□□□□ -1.23
CLK1-202ENST00000409403 TRIP4Q15650 581 aaPredicted RBP7.35□□□□□ -1.23
CLK1-202ENST00000409403 XKR5Q6UX68 686 aa7.35□□□□□ -1.23
CLK1-202ENST00000409403 PNMA6FA0A0J9YX94 578 aa7.34□□□□□ -1.23
CLK1-202ENST00000409403 VAMP1P23763 118 aa7.34□□□□□ -1.23
CLK1-202ENST00000409403 GRNP28799 593 aaKnown RBP7.34□□□□□ -1.23
CLK1-202ENST00000409403 ZNF438Q7Z4V0 828 aa7.34□□□□□ -1.23
CLK1-202ENST00000409403 C8orf37Q96NL8 207 aa7.34□□□□□ -1.23
CLK1-202ENST00000409403 CSRNP1Q96S65 589 aa7.34□□□□□ -1.23
CLK1-202ENST00000409403 ZCCHC2Q9C0B9 1178 aaKnown RBP7.34□□□□□ -1.23
CLK1-202ENST00000409403 C11orf16Q9NQ32 467 aa7.34□□□□□ -1.23
CLK1-202ENST00000409403 RTEL1-TNFRSF6BF6WH68 1400 aa7.34□□□□□ -1.24
CLK1-202ENST00000409403 TNRQ92752 1358 aa7.33□□□□□ -1.24
CLK1-202ENST00000409403 FAM135AQ9P2D6 1515 aa7.33□□□□□ -1.24
CLK1-202ENST00000409403 H7C1W4 665 aa7.33□□□□□ -1.24
CLK1-202ENST00000409403 FAM157BP0CG42 384 aa7.33□□□□□ -1.24
CLK1-202ENST00000409403 ORC1Q13415 861 aa7.33□□□□□ -1.24
CLK1-202ENST00000409403 ALG1LQ6GMV1 187 aa7.33□□□□□ -1.24
CLK1-202ENST00000409403 TRIM47Q96LD4 638 aa7.33□□□□□ -1.24
CLK1-202ENST00000409403 NUCKS1Q9H1E3 243 aaKnown RBP7.33□□□□□ -1.24
CLK1-202ENST00000409403 DNAJC25Q9H1X3 360 aa7.33□□□□□ -1.24
CLK1-202ENST00000409403 PLXNC1O60486 1568 aa7.33□□□□□ -1.24
CLK1-202ENST00000409403 EIF1AYO14602 144 aaKnown RBP7.32□□□□□ -1.24
CLK1-202ENST00000409403 ATXN7O15265 892 aaPredicted RBP7.32□□□□□ -1.24
CLK1-202ENST00000409403 XYLBO75191 536 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 TNFRSF21O75509 655 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 EGFRP00533 1210 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 THBS1P07996 1170 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 KCNQ4P56696 695 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 XPCQ01831 940 aaPredicted RBP7.32□□□□□ -1.24
CLK1-202ENST00000409403 CCDC155Q8N6L0 562 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 WWC3Q9ULE0 1092 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 PCDHGC4Q9Y5F7 938 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 ARHGAP5Q13017 1502 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 EFSO43281 561 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 CPNE3O75131 537 aaKnown RBP7.32□□□□□ -1.24
CLK1-202ENST00000409403 GLIPR1L2Q4G1C9 344 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 SNX29Q8TEQ0 813 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 FBF1Q8TES7 1133 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 DUSP9Q99956 384 aaKnown RBP7.32□□□□□ -1.24
CLK1-202ENST00000409403 ELP3Q9H9T3 547 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 PARP2Q9UGN5 583 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 KCNH4Q9UQ05 1017 aa7.32□□□□□ -1.24
CLK1-202ENST00000409403 NOP58Q9Y2X3 529 aaKnown RBP7.32□□□□□ -1.24
CLK1-202ENST00000409403 UNC13BO14795 1591 aa7.31□□□□□ -1.24
CLK1-202ENST00000409403 CDC42BPBQ9Y5S2 1711 aa7.31□□□□□ -1.24
CLK1-202ENST00000409403 CCER2I3L3R5 266 aa7.31□□□□□ -1.24
CLK1-202ENST00000409403 ITGAEP38570 1179 aa7.31□□□□□ -1.24
CLK1-202ENST00000409403 TRIM22Q8IYM9 498 aa7.31□□□□□ -1.24
CLK1-202ENST00000409403 SETDB2Q96T68 719 aa7.31□□□□□ -1.24
CLK1-202ENST00000409403 GMPR2Q9P2T1 348 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms