RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 ANKLE2Q86XL3 938 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 KIAA1524Q8TCG1 905 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 UBA7P41226 1012 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 TTC6Q86TZ1 520 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 NUTM2AQ8IVF1 878 aaPredicted RBP12.64□□□□□ -0.39
HPS4-202ENST00000398145 BABAM1Q9NWV8 329 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 EIF4G3O43432 1585 aaKnown RBP12.64□□□□□ -0.39
HPS4-202ENST00000398145 CCDC194A0A1B0GVG4 234 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 NBPF7P0C2Y1 421 aaPredicted RBP12.64□□□□□ -0.39
HPS4-202ENST00000398145 TRIM21P19474 475 aaKnown RBP12.64□□□□□ -0.39
HPS4-202ENST00000398145 CYLC1P35663 651 aaPredicted RBP12.64□□□□□ -0.39
HPS4-202ENST00000398145 ZNF569Q5MCW4 686 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 SIRT2Q8IXJ6 389 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 EDC4Q6P2E9 1401 aaKnown RBP12.64□□□□□ -0.39
HPS4-202ENST00000398145 NCKAP5LQ9HCH0 1330 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 MATR3P43243 847 aaKnown RBP eCLIP12.64□□□□□ -0.39
HPS4-202ENST00000398145 FANCCQ00597 558 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 HLTFQ14527 1009 aaKnown RBP eCLIP12.64□□□□□ -0.39
HPS4-202ENST00000398145 HDXQ7Z353 690 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 GPATCH11Q8N954 259 aa12.64□□□□□ -0.39
HPS4-202ENST00000398145 ELP1O95163 1332 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 ANKRD18BA2A2Z9 1011 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 IKQ13123 557 aaPredicted RBP12.63□□□□□ -0.39
HPS4-202ENST00000398145 UTP14CQ5TAP6 766 aaKnown RBP12.63□□□□□ -0.39
HPS4-202ENST00000398145 SSH3Q8TE77 659 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 AKR1B10O60218 316 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 RRAGBQ5VZM2 374 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 BICC1Q9H694 974 aaKnown RBP12.63□□□□□ -0.39
HPS4-202ENST00000398145 RHOXF2BP0C7M4 288 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 NAA16Q6N069 864 aaPredicted RBP12.63□□□□□ -0.39
HPS4-202ENST00000398145 KRBA2Q6ZNG9 492 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 IFNL2Q8IZJ0 200 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 RHOXF2Q9BQY4 288 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 RMND1Q9NWS8 449 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 FAM135BQ49AJ0 1406 aa12.63□□□□□ -0.39
HPS4-202ENST00000398145 IPO4Q8TEX9 1081 aaKnown RBP12.62□□□□□ -0.39
HPS4-202ENST00000398145 TRIM47Q96LD4 638 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 USP44Q9H0E7 712 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 PRDM15P57071 1507 aaPredicted RBP12.62□□□□□ -0.39
HPS4-202ENST00000398145 EBAG9O00559 213 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 RNF113AO15541 343 aaKnown RBP12.62□□□□□ -0.39
HPS4-202ENST00000398145 JAK2O60674 1132 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 WTAPQ15007 396 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 NBPF11Q86T75 865 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 TMTC2Q8N394 836 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 PDLIM2Q96JY6 352 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 ARHGEF5Q12774 1597 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 ARHGAP6O43182 974 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 NR1I2O75469 434 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 SLC5A1P13866 664 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 IFFO1Q0D2I5 559 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 SPECC1Q5M775 1068 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 FAM114A1Q8IWE2 563 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 MRFAP1L1Q96HT8 127 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 TSG101Q99816 390 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 HOXB7P09629 217 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 IBSPP21815 317 aaPredicted RBP12.62□□□□□ -0.39
HPS4-202ENST00000398145 TFCP2Q12800 502 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 TCP11L1Q9NUJ3 509 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 STAP2Q9UGK3 403 aa12.62□□□□□ -0.39
HPS4-202ENST00000398145 TRIM75PA6NK02 468 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 HSF2BPO75031 334 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 RTN1Q16799 776 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 PLCD4Q9BRC7 762 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 ZSWIM6Q9HCJ5 1215 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 NSFL1CQ9UNZ2 370 aaKnown RBP12.61□□□□□ -0.39
HPS4-202ENST00000398145 ERCC6LQ2NKX8 1250 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 ANO1Q5XXA6 986 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 CLEC17AQ6ZS10 378 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 VPS36Q86VN1 386 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 CNGA4Q8IV77 575 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 DHX58Q96C10 678 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 NCOA5Q9HCD5 579 aaKnown RBP12.61□□□□□ -0.39
HPS4-202ENST00000398145 AKR1B15C9JRZ8 316 aaPredicted RBP12.61□□□□□ -0.39
HPS4-202ENST00000398145 KRT86O43790 486 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 STX17P56962 302 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 SLC39A6Q13433 755 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 LRRC8AQ8IWT6 810 aa12.61□□□□□ -0.39
HPS4-202ENST00000398145 DHX37Q8IY37 1157 aaKnown RBP12.61□□□□□ -0.39
HPS4-202ENST00000398145 KRI1Q8N9T8 703 aaKnown RBP12.61□□□□□ -0.39
HPS4-202ENST00000398145 BCCIPQ9P287 314 aaKnown RBP eCLIP12.61□□□□□ -0.39
HPS4-202ENST00000398145 ZNF202O95125 648 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 TTC31Q49AM3 519 aaPredicted RBP12.6□□□□□ -0.39
HPS4-202ENST00000398145 KRT23Q9C075 422 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 TRMT112Q9UI30 125 aaKnown RBP12.6□□□□□ -0.39
HPS4-202ENST00000398145 PLXNC1O60486 1568 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 KRT83P78385 493 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 ENOX2Q16206 610 aaKnown RBP12.6□□□□□ -0.39
HPS4-202ENST00000398145 CCDC178Q5BJE1 867 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 ZBTB9Q96C00 473 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 RAB34Q9BZG1 259 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 XPO4Q9C0E2 1151 aaKnown RBP12.6□□□□□ -0.39
HPS4-202ENST00000398145 CNNM2Q9H8M5 875 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 DDX21Q9NR30 783 aaKnown RBP eCLIP12.6□□□□□ -0.39
HPS4-202ENST00000398145 SEPT11Q9NVA2 429 aaKnown RBP12.6□□□□□ -0.39
HPS4-202ENST00000398145 CEP170Q5SW79 1584 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 OPA1O60313 960 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 NEFHP12036 1026 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 AMPD3Q01432 767 aa12.6□□□□□ -0.39
HPS4-202ENST00000398145 SLC9C2Q5TAH2 1124 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms