RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 WDR70Q9NW82 654 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 ASAP1Q9ULH1 1129 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 COL11A2P13942 1736 aaPredicted RBP6.42□□□□□ -1.38
VPS41-203ENST00000395969 MYO5AQ9Y4I1 1855 aaKnown RBP6.42□□□□□ -1.38
VPS41-203ENST00000395969 SURF6O75683 361 aaKnown RBP6.42□□□□□ -1.38
VPS41-203ENST00000395969 LETM1O95202 739 aaPredicted RBP6.42□□□□□ -1.38
VPS41-203ENST00000395969 BAG4O95429 457 aaKnown RBP6.42□□□□□ -1.38
VPS41-203ENST00000395969 EIF2S2P20042 333 aaKnown RBP6.42□□□□□ -1.38
VPS41-203ENST00000395969 SSFA2P28290 1259 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 ALX1Q15699 326 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 ZSCAN23Q3MJ62 389 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 PPP4R3BQ5MIZ7 849 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 SLC4A10Q6U841 1118 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 TMEM87AQ8NBN3 555 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 MYRIPQ8NFW9 859 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 RBSNQ9H1K0 784 aa6.42□□□□□ -1.38
VPS41-203ENST00000395969 UBN2Q6ZU65 1347 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 LOC102724428A0A0B4J2F2 783 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 GOLGA6L22H0YM25 854 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 SEMA3EO15041 775 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 CTSWP56202 376 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 SIK1P57059 783 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 TTLL7Q6ZT98 887 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 TTLL11Q8NHH1 800 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 JARID2Q92833 1246 aaPredicted RBP6.41□□□□□ -1.38
VPS41-203ENST00000395969 DDX49Q9Y6V7 483 aaKnown RBP6.41□□□□□ -1.38
VPS41-203ENST00000395969 BRCA1P38398 1863 aaKnown RBP6.41□□□□□ -1.38
VPS41-203ENST00000395969 CCDC171Q6TFL3 1326 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 SALL1Q9NSC2 1324 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 SNED1Q8TER0 1413 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 FAM177BA6PVY3 158 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 RPS6KA4O75676 772 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 CBX1P83916 185 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 G3BP1Q13283 466 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS41-203ENST00000395969 VPS53Q5VIR6 699 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 DNAJC10Q8IXB1 793 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 ZNF710Q8N1W2 664 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 TSC1Q92574 1164 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 ZNF830Q96NB3 372 aaPredicted RBP6.41□□□□□ -1.38
VPS41-203ENST00000395969 EXOC6BQ9Y2D4 811 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 CD2BP2O95400 341 aaKnown RBP6.41□□□□□ -1.38
VPS41-203ENST00000395969 RCAN1P53805 252 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 ZMYM1Q5SVZ6 1142 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 MPNDQ8N594 471 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 KBTBD3Q8NAB2 608 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 GJD4Q96KN9 370 aaPredicted RBP6.41□□□□□ -1.38
VPS41-203ENST00000395969 CCDC39Q9UFE4 941 aa6.41□□□□□ -1.38
VPS41-203ENST00000395969 DBNLQ9UJU6 430 aaKnown RBP6.41□□□□□ -1.38
VPS41-203ENST00000395969 MCCP23508 829 aa6.4□□□□□ -1.38
VPS41-203ENST00000395969 ITPK1Q13572 414 aa6.4□□□□□ -1.38
VPS41-203ENST00000395969 LRRFIP1Q32MZ4 808 aaKnown RBP6.4□□□□□ -1.38
VPS41-203ENST00000395969 LMBRD1Q9NUN5 540 aa6.4□□□□□ -1.38
VPS41-203ENST00000395969 NARFQ9UHQ1 456 aa6.4□□□□□ -1.38
VPS41-203ENST00000395969 A1BGP04217 495 aa6.4□□□□□ -1.39
VPS41-203ENST00000395969 ZBTB9Q96C00 473 aa6.4□□□□□ -1.39
VPS41-203ENST00000395969 CDC5LQ99459 802 aaKnown RBP6.4□□□□□ -1.39
VPS41-203ENST00000395969 TRPC5Q9UL62 973 aaPredicted RBP6.4□□□□□ -1.39
VPS41-203ENST00000395969 CRKLP46109 303 aaKnown RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 KRT32Q14532 448 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 CHMP4CQ96CF2 233 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 PRIMPOLQ96LW4 560 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 ZNF652Q9Y2D9 606 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 NAV1Q8NEY1 1877 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 PLSCR1O15162 318 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 SMARCA5O60264 1052 aaPredicted RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 PRIM1P49642 420 aaKnown RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 HMGN5P82970 282 aaKnown RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 ZSCAN31Q96LW9 406 aaPredicted RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 SH2B1Q9NRF2 756 aaPredicted RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 TMEM51Q9NW97 253 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 CGNQ9P2M7 1197 aaKnown RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 PNPLA7Q6ZV29 1317 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 COL2A1P02458 1487 aaPredicted RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 ST18O60284 1047 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 FGRP09769 529 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 UBE3CQ15386 1083 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 CRY2Q49AN0 593 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 DNTTIP2Q5QJE6 756 aaKnown RBP6.39□□□□□ -1.39
VPS41-203ENST00000395969 TMC4Q7Z404 712 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 NYXQ9GZU5 481 aa6.39□□□□□ -1.39
VPS41-203ENST00000395969 GTPBP6O43824 516 aaPredicted RBP6.38□□□□□ -1.39
VPS41-203ENST00000395969 TAF5LO75529 589 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 UQCRFS1P1P0C7P4 283 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 NUCB2P80303 420 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 TTF1Q15361 905 aaPredicted RBP6.38□□□□□ -1.39
VPS41-203ENST00000395969 TAF3Q5VWG9 929 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 LRSAM1Q6UWE0 723 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 SPOCK2Q92563 424 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 BCL2L12Q9HB09 334 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 ZBTB1Q9Y2K1 713 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 TCRBV5S4A2TA0A5A2 114 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 IFIT2P09913 472 aaKnown RBP6.38□□□□□ -1.39
VPS41-203ENST00000395969 PCP11498 1178 aaKnown RBP6.38□□□□□ -1.39
VPS41-203ENST00000395969 DSG3P32926 999 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 ATP2B3Q16720 1220 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 CAVIN1Q6NZI2 390 aaKnown RBP6.38□□□□□ -1.39
VPS41-203ENST00000395969 UBE3BQ7Z3V4 1068 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 SNX14Q9Y5W7 946 aa6.38□□□□□ -1.39
VPS41-203ENST00000395969 ANKRD1Q15327 319 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms