RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CELF1Q92879 486 aaKnown RBP21.88■■□□□ 1.09
CCDC88C-203ENST00000389856 KCNJ4P48050 445 aa21.87■■□□□ 1.09
CCDC88C-203ENST00000389856 HELLSQ9NRZ9 838 aa21.87■■□□□ 1.09
CCDC88C-203ENST00000389856 MINPP1Q9UNW1 487 aa21.87■■□□□ 1.09
CCDC88C-203ENST00000389856 PARP3Q9Y6F1 533 aa21.87■■□□□ 1.09
CCDC88C-203ENST00000389856 TAF5LO75529 589 aa21.86■■□□□ 1.09
CCDC88C-203ENST00000389856 DDIT3P35638 169 aa21.86■■□□□ 1.09
CCDC88C-203ENST00000389856 CRY2Q49AN0 593 aa21.86■■□□□ 1.09
CCDC88C-203ENST00000389856 LSG1Q9H089 658 aaKnown RBP21.86■■□□□ 1.09
CCDC88C-203ENST00000389856 PNPLA7Q6ZV29 1317 aa21.86■■□□□ 1.09
CCDC88C-203ENST00000389856 NRXN2Q9P2S2 1712 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 ST18O60284 1047 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 EN1Q05925 392 aaPredicted RBP21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 DDR1Q08345 913 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 EZH2Q15910 746 aaKnown RBP21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 SLC15A2Q16348 729 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 MCMDC2Q4G0Z9 681 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 CAVIN4Q5BKX8 364 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 TMC4Q7Z404 712 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 CCDC125Q86Z20 511 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 EDC3Q96F86 508 aaKnown RBP21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 CCDC171Q6TFL3 1326 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 MED23Q9ULK4 1368 aa21.85■■□□□ 1.09
CCDC88C-203ENST00000389856 EP400Q96L91 3159 aa21.84■■□□□ 1.09
CCDC88C-203ENST00000389856 K7ELQ4 463 aaPredicted RBP21.84■■□□□ 1.09
CCDC88C-203ENST00000389856 RNF113AO15541 343 aaKnown RBP21.84■■□□□ 1.09
CCDC88C-203ENST00000389856 HSPA4P34932 840 aa21.84■■□□□ 1.09
CCDC88C-203ENST00000389856 CCDC24Q8N4L8 307 aa21.84■■□□□ 1.09
CCDC88C-203ENST00000389856 FAM227BQ96M60 508 aa21.84■■□□□ 1.09
CCDC88C-203ENST00000389856 RNF20Q5VTR2 975 aa21.84■■□□□ 1.09
CCDC88C-203ENST00000389856 IL17RAQ96F46 866 aa21.84■■□□□ 1.09
CCDC88C-203ENST00000389856 BRIP1Q9BX63 1249 aa21.84■■□□□ 1.09
CCDC88C-203ENST00000389856 MYH7P12883 1935 aa21.83■■□□□ 1.09
CCDC88C-203ENST00000389856 A0A0D9SFI3 127 aa21.83■■□□□ 1.08
CCDC88C-203ENST00000389856 PTMSP20962 102 aa21.83■■□□□ 1.08
CCDC88C-203ENST00000389856 AKAP11Q9UKA4 1901 aa21.83■■□□□ 1.08
CCDC88C-203ENST00000389856 TAF1P21675 1872 aa21.82■■□□□ 1.08
CCDC88C-203ENST00000389856 BBOX1O75936 387 aa21.82■■□□□ 1.08
CCDC88C-203ENST00000389856 MCAMP43121 646 aa21.82■■□□□ 1.08
CCDC88C-203ENST00000389856 ZAP70P43403 619 aa21.82■■□□□ 1.08
CCDC88C-203ENST00000389856 PHKA1P46020 1223 aa21.82■■□□□ 1.08
CCDC88C-203ENST00000389856 VPS37DQ86XT2 251 aa21.82■■□□□ 1.08
CCDC88C-203ENST00000389856 CRAMP1Q96RY5 1269 aa21.82■■□□□ 1.08
CCDC88C-203ENST00000389856 NDUFB9Q9Y6M9 179 aa21.82■■□□□ 1.08
CCDC88C-203ENST00000389856 KLRG2A4D1S0 409 aaPredicted RBP21.81■■□□□ 1.08
CCDC88C-203ENST00000389856 SEMA3EO15041 775 aa21.81■■□□□ 1.08
CCDC88C-203ENST00000389856 ZKSCAN1P17029 563 aaPredicted RBP21.81■■□□□ 1.08
CCDC88C-203ENST00000389856 HOXA10P31260 410 aaPredicted RBP21.81■■□□□ 1.08
CCDC88C-203ENST00000389856 PDE6BP35913 854 aa21.81■■□□□ 1.08
CCDC88C-203ENST00000389856 SPATA5Q8NB90 893 aa21.81■■□□□ 1.08
CCDC88C-203ENST00000389856 MCM4P33991 863 aa21.8■■□□□ 1.08
CCDC88C-203ENST00000389856 ZMYM1Q5SVZ6 1142 aa21.8■■□□□ 1.08
CCDC88C-203ENST00000389856 IL25Q9H293 177 aa21.8■■□□□ 1.08
CCDC88C-203ENST00000389856 LEMD3Q9Y2U8 911 aa21.8■■□□□ 1.08
CCDC88C-203ENST00000389856 DDX11L8A8MPP1 907 aa21.8■■□□□ 1.08
CCDC88C-203ENST00000389856 MMP10P09238 476 aa21.8■■□□□ 1.08
CCDC88C-203ENST00000389856 MCM2P49736 904 aa21.8■■□□□ 1.08
CCDC88C-203ENST00000389856 XDHP47989 1333 aa21.79■■□□□ 1.08
CCDC88C-203ENST00000389856 SCARF1Q14162 830 aa21.79■■□□□ 1.08
CCDC88C-203ENST00000389856 MAP4K1Q92918 833 aa21.79■■□□□ 1.08
CCDC88C-203ENST00000389856 HMG20BQ9P0W2 317 aa21.79■■□□□ 1.08
CCDC88C-203ENST00000389856 U3KPZ7 1027 aaPredicted RBP21.79■■□□□ 1.08
CCDC88C-203ENST00000389856 COL4A1P02462 1669 aa21.79■■□□□ 1.08
CCDC88C-203ENST00000389856 ZNF804BA4D1E1 1349 aa21.78■■□□□ 1.08
CCDC88C-203ENST00000389856 ZBTB22O15209 634 aa21.78■■□□□ 1.08
CCDC88C-203ENST00000389856 MAP3K12Q12852 859 aa21.78■■□□□ 1.08
CCDC88C-203ENST00000389856 APPBP2Q92624 585 aa21.78■■□□□ 1.08
CCDC88C-203ENST00000389856 ANKIB1Q9P2G1 1089 aa21.78■■□□□ 1.08
CCDC88C-203ENST00000389856 DENND2AQ9ULE3 1009 aa21.77■■□□□ 1.08
CCDC88C-203ENST00000389856 PDS5AQ29RF7 1337 aaKnown RBP21.77■■□□□ 1.08
CCDC88C-203ENST00000389856 NPR1P16066 1061 aa21.77■■□□□ 1.07
CCDC88C-203ENST00000389856 BCAMP50895 628 aa21.77■■□□□ 1.07
CCDC88C-203ENST00000389856 RASGRF1Q13972 1273 aa21.77■■□□□ 1.07
CCDC88C-203ENST00000389856 WASHC4Q2M389 1173 aa21.77■■□□□ 1.07
CCDC88C-203ENST00000389856 TMX4Q9H1E5 349 aaPredicted RBP21.77■■□□□ 1.07
CCDC88C-203ENST00000389856 RBM8AQ9Y5S9 174 aaKnown RBP21.77■■□□□ 1.07
CCDC88C-203ENST00000389856 CYP2E1P05181 493 aaPredicted RBP21.76■■□□□ 1.07
CCDC88C-203ENST00000389856 HSP90AA1P07900 732 aaKnown RBP21.76■■□□□ 1.07
CCDC88C-203ENST00000389856 ALDH1B1P30837 517 aa21.76■■□□□ 1.07
CCDC88C-203ENST00000389856 UBE3CQ15386 1083 aa21.76■■□□□ 1.07
CCDC88C-203ENST00000389856 KCNB2Q92953 911 aa21.76■■□□□ 1.07
CCDC88C-203ENST00000389856 ANO8Q9HCE9 1232 aaPredicted RBP21.76■■□□□ 1.07
CCDC88C-203ENST00000389856 DOCK2Q92608 1830 aa21.76■■□□□ 1.07
CCDC88C-203ENST00000389856 ANKRD31Q8N7Z5 1873 aa21.75■■□□□ 1.07
CCDC88C-203ENST00000389856 IGSF3O75054 1194 aa21.75■■□□□ 1.07
CCDC88C-203ENST00000389856 IDH1O75874 414 aaKnown RBP21.75■■□□□ 1.07
CCDC88C-203ENST00000389856 PSMA5P28066 241 aa21.75■■□□□ 1.07
CCDC88C-203ENST00000389856 PTH1RQ03431 593 aa21.75■■□□□ 1.07
CCDC88C-203ENST00000389856 KRT32Q14532 448 aa21.75■■□□□ 1.07
CCDC88C-203ENST00000389856 GBP4Q96PP9 640 aa21.75■■□□□ 1.07
CCDC88C-203ENST00000389856 DSCC1Q9BVC3 393 aa21.75■■□□□ 1.07
CCDC88C-203ENST00000389856 ATP2B4P23634 1241 aa21.74■■□□□ 1.07
CCDC88C-203ENST00000389856 HIBADHP31937 336 aaKnown RBP21.74■■□□□ 1.07
CCDC88C-203ENST00000389856 NECTIN1Q15223 517 aa21.74■■□□□ 1.07
CCDC88C-203ENST00000389856 TMED8Q6PL24 325 aaPredicted RBP21.74■■□□□ 1.07
CCDC88C-203ENST00000389856 ZNF589Q86UQ0 364 aaPredicted RBP21.74■■□□□ 1.07
CCDC88C-203ENST00000389856 SPRYD3Q8NCJ5 442 aa21.74■■□□□ 1.07
CCDC88C-203ENST00000389856 TM6SF1Q9BZW5 370 aa21.74■■□□□ 1.07
CCDC88C-203ENST00000389856 ADD2P35612 726 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 NEK4P51957 841 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms