RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 STX6O43752 255 aa25.68■■□□□ 1.7
TRIM54-202ENST00000380075 HSP90AB3PQ58FF7 597 aa25.68■■□□□ 1.7
TRIM54-202ENST00000380075 SPEF2Q9C093 1822 aa25.68■■□□□ 1.7
TRIM54-202ENST00000380075 ATF5Q9Y2D1 282 aaPredicted RBP25.68■■□□□ 1.7
TRIM54-202ENST00000380075 ERVV-1B6SEH8 477 aa25.67■■□□□ 1.7
TRIM54-202ENST00000380075 CCDC57Q2TAC2 916 aa25.67■■□□□ 1.7
TRIM54-202ENST00000380075 ZBTB38Q8NAP3 1195 aaPredicted RBP25.67■■□□□ 1.7
TRIM54-202ENST00000380075 TMEM87AQ8NBN3 555 aa25.67■■□□□ 1.7
TRIM54-202ENST00000380075 RPS6KB1P23443 525 aa25.67■■□□□ 1.7
TRIM54-202ENST00000380075 NEUROD6Q96NK8 337 aa25.67■■□□□ 1.7
TRIM54-202ENST00000380075 SYT1P21579 422 aa25.66■■□□□ 1.7
TRIM54-202ENST00000380075 GIGYF2Q6Y7W6 1299 aaKnown RBP25.66■■□□□ 1.7
TRIM54-202ENST00000380075 MTFR1LQ9H019 292 aa25.66■■□□□ 1.7
TRIM54-202ENST00000380075 HELLSQ9NRZ9 838 aa25.66■■□□□ 1.7
TRIM54-202ENST00000380075 PAG1Q9NWQ8 432 aa25.66■■□□□ 1.7
TRIM54-202ENST00000380075 CDHR2Q9BYE9 1310 aa25.66■■□□□ 1.7
TRIM54-202ENST00000380075 LARGE1O95461 756 aa25.65■■□□□ 1.7
TRIM54-202ENST00000380075 CCDC83Q8IWF9 413 aa25.65■■□□□ 1.7
TRIM54-202ENST00000380075 NLGN1Q8N2Q7 840 aa25.65■■□□□ 1.7
TRIM54-202ENST00000380075 CEP126Q9P2H0 1117 aa25.65■■□□□ 1.7
TRIM54-202ENST00000380075 AKAP2Q9Y2D5 859 aa25.65■■□□□ 1.7
TRIM54-202ENST00000380075 SYAP1Q96A49 352 aaPredicted RBP25.65■■□□□ 1.7
TRIM54-202ENST00000380075 LRRC24Q50LG9 513 aa25.64■■□□□ 1.7
TRIM54-202ENST00000380075 TBC1D9BQ66K14 1250 aa25.64■■□□□ 1.7
TRIM54-202ENST00000380075 CLEC4GQ6UXB4 293 aa25.64■■□□□ 1.7
TRIM54-202ENST00000380075 A0A1B0GUL7 405 aa25.64■■□□□ 1.69
TRIM54-202ENST00000380075 CSF1RP07333 972 aa25.64■■□□□ 1.69
TRIM54-202ENST00000380075 GJB2P29033 226 aa25.64■■□□□ 1.69
TRIM54-202ENST00000380075 ME3Q16798 604 aa25.64■■□□□ 1.69
TRIM54-202ENST00000380075 BICDL1Q6ZP65 573 aa25.64■■□□□ 1.69
TRIM54-202ENST00000380075 DDX46Q7L014 1031 aaKnown RBP25.64■■□□□ 1.69
TRIM54-202ENST00000380075 LRRFIP1Q32MZ4 808 aaKnown RBP25.63■■□□□ 1.69
TRIM54-202ENST00000380075 LARP6Q9BRS8 491 aaKnown RBP25.63■■□□□ 1.69
TRIM54-202ENST00000380075 ZNF652Q9Y2D9 606 aa25.63■■□□□ 1.69
TRIM54-202ENST00000380075 F13A1P00488 732 aa25.62■■□□□ 1.69
TRIM54-202ENST00000380075 NASPP49321 788 aaPredicted RBP25.62■■□□□ 1.69
TRIM54-202ENST00000380075 TIMM10P62072 90 aa25.62■■□□□ 1.69
TRIM54-202ENST00000380075 TPCN1Q9ULQ1 816 aa25.62■■□□□ 1.69
TRIM54-202ENST00000380075 NFIXQ14938 502 aa25.62■■□□□ 1.69
TRIM54-202ENST00000380075 ANP32BQ92688 251 aaKnown RBP25.62■■□□□ 1.69
TRIM54-202ENST00000380075 ZNF594Q96JF6 807 aaPredicted RBP25.62■■□□□ 1.69
TRIM54-202ENST00000380075 RTN4Q9NQC3 1192 aaKnown RBP25.62■■□□□ 1.69
TRIM54-202ENST00000380075 IFIT1P09914 478 aaKnown RBP25.61■■□□□ 1.69
TRIM54-202ENST00000380075 TM4SF1P30408 202 aa25.61■■□□□ 1.69
TRIM54-202ENST00000380075 CSPP1Q1MSJ5 1256 aa25.61■■□□□ 1.69
TRIM54-202ENST00000380075 CHAMP1Q96JM3 812 aa25.61■■□□□ 1.69
TRIM54-202ENST00000380075 TMEM63CQ9P1W3 806 aa25.61■■□□□ 1.69
TRIM54-202ENST00000380075 SCN7AQ01118 1682 aa25.61■■□□□ 1.69
TRIM54-202ENST00000380075 GOLIM4O00461 696 aa25.6■■□□□ 1.69
TRIM54-202ENST00000380075 RGL2O15211 777 aa25.6■■□□□ 1.69
TRIM54-202ENST00000380075 PDCP20941 246 aa25.6■■□□□ 1.69
TRIM54-202ENST00000380075 DSCC1Q9BVC3 393 aa25.6■■□□□ 1.69
TRIM54-202ENST00000380075 ABCC12Q96J65 1359 aa25.6■■□□□ 1.69
TRIM54-202ENST00000380075 MMP10P09238 476 aa25.6■■□□□ 1.69
TRIM54-202ENST00000380075 ZMYM1Q5SVZ6 1142 aa25.6■■□□□ 1.69
TRIM54-202ENST00000380075 NEK1Q96PY6 1258 aa25.6■■□□□ 1.69
TRIM54-202ENST00000380075 NDUFB9Q9Y6M9 179 aa25.6■■□□□ 1.69
TRIM54-202ENST00000380075 BCORQ6W2J9 1755 aa25.59■■□□□ 1.69
TRIM54-202ENST00000380075 GPTP24298 496 aa25.59■■□□□ 1.69
TRIM54-202ENST00000380075 CCDC173Q0VFZ6 552 aa25.59■■□□□ 1.69
TRIM54-202ENST00000380075 ST3GAL1Q11201 340 aa25.59■■□□□ 1.69
TRIM54-202ENST00000380075 IFIT5Q13325 482 aaKnown RBP25.59■■□□□ 1.69
TRIM54-202ENST00000380075 CCDC158Q5M9N0 1113 aa25.59■■□□□ 1.69
TRIM54-202ENST00000380075 LRSAM1Q6UWE0 723 aa25.59■■□□□ 1.69
TRIM54-202ENST00000380075 NIP7Q9Y221 180 aaKnown RBP eCLIP25.59■■□□□ 1.69
TRIM54-202ENST00000380075 HMGB1P09429 215 aaKnown RBP25.58■■□□□ 1.69
TRIM54-202ENST00000380075 TAF7LQ5H9L4 462 aa25.58■■□□□ 1.69
TRIM54-202ENST00000380075 USP48Q86UV5 1035 aa25.58■■□□□ 1.69
TRIM54-202ENST00000380075 PUS3Q9BZE2 481 aaKnown RBP25.58■■□□□ 1.69
TRIM54-202ENST00000380075 SPON1Q9HCB6 807 aa25.58■■□□□ 1.69
TRIM54-202ENST00000380075 PTGER2P43116 358 aa25.58■■□□□ 1.69
TRIM54-202ENST00000380075 DDR1Q08345 913 aa25.58■■□□□ 1.69
TRIM54-202ENST00000380075 TOB2Q14106 344 aaPredicted RBP25.58■■□□□ 1.69
TRIM54-202ENST00000380075 NLRP10Q86W26 655 aa25.58■■□□□ 1.69
TRIM54-202ENST00000380075 SETDB2Q96T68 719 aa25.58■■□□□ 1.69
TRIM54-202ENST00000380075 RBM27Q9P2N5 1060 aaKnown RBP25.58■■□□□ 1.69
TRIM54-202ENST00000380075 MTMR6Q9Y217 621 aa25.58■■□□□ 1.69
TRIM54-202ENST00000380075 ZNF34Q8IZ26 560 aa25.57■■□□□ 1.68
TRIM54-202ENST00000380075 KLHL34Q8N239 644 aa25.57■■□□□ 1.68
TRIM54-202ENST00000380075 FAM89AQ96GI7 184 aa25.57■■□□□ 1.68
TRIM54-202ENST00000380075 SGIP1Q9BQI5 828 aa25.57■■□□□ 1.68
TRIM54-202ENST00000380075 ANKRD36CQ5JPF3 1778 aa25.56■■□□□ 1.68
TRIM54-202ENST00000380075 SEC62Q99442 399 aaKnown RBP25.56■■□□□ 1.68
TRIM54-202ENST00000380075 RNF113AO15541 343 aaKnown RBP25.56■■□□□ 1.68
TRIM54-202ENST00000380075 CCDC129Q6ZRS4 1044 aa25.56■■□□□ 1.68
TRIM54-202ENST00000380075 PPP1R9BQ96SB3 815 aa25.56■■□□□ 1.68
TRIM54-202ENST00000380075 NSFL1CQ9UNZ2 370 aaKnown RBP25.56■■□□□ 1.68
TRIM54-202ENST00000380075 UBN2Q6ZU65 1347 aa25.56■■□□□ 1.68
TRIM54-202ENST00000380075 POLRMTO00411 1230 aaKnown RBP25.55■■□□□ 1.68
TRIM54-202ENST00000380075 ZFYP08048 801 aaPredicted RBP25.55■■□□□ 1.68
TRIM54-202ENST00000380075 CYP21A2P08686 494 aa25.55■■□□□ 1.68
TRIM54-202ENST00000380075 TAF6LQ9Y6J9 622 aa25.55■■□□□ 1.68
TRIM54-202ENST00000380075 POLD1P28340 1107 aa25.55■■□□□ 1.68
TRIM54-202ENST00000380075 TTC39AQ5SRH9 613 aa25.55■■□□□ 1.68
TRIM54-202ENST00000380075 NECAB1Q8N987 351 aa25.55■■□□□ 1.68
TRIM54-202ENST00000380075 FAM177BA6PVY3 158 aa25.54■■□□□ 1.68
TRIM54-202ENST00000380075 UBE2HP62256 183 aa25.54■■□□□ 1.68
TRIM54-202ENST00000380075 GORABQ5T7V8 394 aa25.54■■□□□ 1.68
TRIM54-202ENST00000380075 PARP3Q9Y6F1 533 aa25.54■■□□□ 1.68
TRIM54-202ENST00000380075 NUP98P52948 1817 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms