RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 SMARCC2Q8TAQ2 1214 aa17.21■□□□□ 0.35
COL5A1-201ENST00000371817 GOLGA5Q8TBA6 731 aa17.21■□□□□ 0.35
COL5A1-201ENST00000371817 RNF8O76064 485 aa17.21■□□□□ 0.35
COL5A1-201ENST00000371817 UBXN1Q04323 297 aa17.21■□□□□ 0.35
COL5A1-201ENST00000371817 RTL1A6NKG5 1358 aa17.21■□□□□ 0.35
COL5A1-201ENST00000371817 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.21■□□□□ 0.35
COL5A1-201ENST00000371817 NAPGQ99747 312 aaPredicted RBP17.21■□□□□ 0.35
COL5A1-201ENST00000371817 RRAGDQ9NQL2 400 aaPredicted RBP17.21■□□□□ 0.35
COL5A1-201ENST00000371817 DACT1Q9NYF0 836 aa17.21■□□□□ 0.35
COL5A1-201ENST00000371817 AEBP2Q6ZN18 517 aaPredicted RBP17.21■□□□□ 0.34
COL5A1-201ENST00000371817 CCDC82Q8N4S0 544 aa17.21■□□□□ 0.34
COL5A1-201ENST00000371817 RAPGEF2Q9Y4G8 1499 aa17.21■□□□□ 0.34
COL5A1-201ENST00000371817 TTF1Q15361 905 aaPredicted RBP17.2■□□□□ 0.34
COL5A1-201ENST00000371817 RRAGBQ5VZM2 374 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 USP37Q86T82 979 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 ATP6V0A2Q9Y487 856 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 PLCB3Q01970 1234 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 HMG20BQ9P0W2 317 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 PLEKHO1Q53GL0 409 aaPredicted RBP17.2■□□□□ 0.34
COL5A1-201ENST00000371817 IFNKQ9P0W0 207 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 ATAD2Q6PL18 1390 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 MINDY4BA8MYZ0 360 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 SLFN5Q08AF3 891 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 MRPS27Q92552 414 aaKnown RBP17.2■□□□□ 0.34
COL5A1-201ENST00000371817 GOLGA8AA7E2F4 631 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 CCDC122Q5T0U0 273 aa17.2■□□□□ 0.34
COL5A1-201ENST00000371817 ARID5AQ03989 594 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 PDCD7Q8N8D1 485 aaKnown RBP17.19■□□□□ 0.34
COL5A1-201ENST00000371817 BMP15O95972 392 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 NAA16Q6N069 864 aaPredicted RBP17.19■□□□□ 0.34
COL5A1-201ENST00000371817 GEN1Q17RS7 908 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 RNF41Q9H4P4 317 aaPredicted RBP17.19■□□□□ 0.34
COL5A1-201ENST00000371817 FRMD3A2A2Y4 597 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 INF2Q27J81 1249 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 TTC16Q8NEE8 873 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 KLHDC4Q8TBB5 520 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 SPECC1L-ADORA2AF8WAN1 911 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 DDX54Q8TDD1 881 aaKnown RBP17.19■□□□□ 0.34
COL5A1-201ENST00000371817 MKNK2Q9HBH9 465 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 LARP6Q9BRS8 491 aaKnown RBP17.19■□□□□ 0.34
COL5A1-201ENST00000371817 TMEM110-MUSTN1A8MSY1 372 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 HDAC9Q9UKV0 1011 aa17.19■□□□□ 0.34
COL5A1-201ENST00000371817 AFMP43652 599 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 CUL5Q93034 780 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 TMX3Q96JJ7 454 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 BOLA2Q9H3K6 86 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 LRPPRCP42704 1394 aaKnown RBP17.18■□□□□ 0.34
COL5A1-201ENST00000371817 NEK11Q8NG66 645 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 PFDN4Q9NQP4 134 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 FYCO1Q9BQS8 1478 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 IFIT3O14879 490 aaKnown RBP17.18■□□□□ 0.34
COL5A1-201ENST00000371817 SMARCA5O60264 1052 aaPredicted RBP17.18■□□□□ 0.34
COL5A1-201ENST00000371817 IARSP41252 1262 aaKnown RBP17.18■□□□□ 0.34
COL5A1-201ENST00000371817 PPP1R9AQ9ULJ8 1098 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 I3L4J1 428 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 SH3BP5O60239 455 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 SEPT8Q92599 483 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 CEP104O60308 925 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 AFAP1L2Q8N4X5 818 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 AKR1B15C9JRZ8 316 aaPredicted RBP17.18■□□□□ 0.34
COL5A1-201ENST00000371817 EEF2P13639 858 aaKnown RBP17.18■□□□□ 0.34
COL5A1-201ENST00000371817 MYL6BP14649 208 aa17.18■□□□□ 0.34
COL5A1-201ENST00000371817 RABEP2Q9H5N1 569 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 EHMT1Q9H9B1 1298 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 DACT3Q96B18 629 aaPredicted RBP17.17■□□□□ 0.34
COL5A1-201ENST00000371817 EFCC1Q9HA90 598 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 MRFAP1Q9Y605 127 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 RAB3GAP1Q15042 981 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 MMRN2Q9H8L6 949 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 ZKSCAN8Q15776 578 aaPredicted RBP17.17■□□□□ 0.34
COL5A1-201ENST00000371817 HGSO14964 777 aaPredicted RBP17.17■□□□□ 0.34
COL5A1-201ENST00000371817 PPP2R5AQ15172 486 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 CCT6BQ92526 530 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 CSRNP2Q9H175 543 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 MAP3K7CLP57077 242 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 RBM5P52756 815 aaKnown RBP eCLIP17.17■□□□□ 0.34
COL5A1-201ENST00000371817 UAP1Q16222 522 aaPredicted RBP17.17■□□□□ 0.34
COL5A1-201ENST00000371817 RGS22Q8NE09 1264 aa17.17■□□□□ 0.34
COL5A1-201ENST00000371817 NUCKS1Q9H1E3 243 aaKnown RBP17.17■□□□□ 0.34
COL5A1-201ENST00000371817 ANKRD30BQ9BXX2 1392 aa17.16■□□□□ 0.34
COL5A1-201ENST00000371817 FAM169AQ9Y6X4 670 aa17.16■□□□□ 0.34
COL5A1-201ENST00000371817 ZSCAN29Q8IWY8 852 aaPredicted RBP17.16■□□□□ 0.34
COL5A1-201ENST00000371817 SNX21Q969T3 373 aa17.16■□□□□ 0.34
COL5A1-201ENST00000371817 EVI5LQ96CN4 794 aa17.16■□□□□ 0.34
COL5A1-201ENST00000371817 DDX21Q9NR30 783 aaKnown RBP eCLIP17.16■□□□□ 0.34
COL5A1-201ENST00000371817 VPS41P49754 854 aa17.16■□□□□ 0.34
COL5A1-201ENST00000371817 METAP2P50579 478 aaKnown RBP eCLIP17.16■□□□□ 0.34
COL5A1-201ENST00000371817 SEL1L2Q5TEA6 688 aa17.16■□□□□ 0.34
COL5A1-201ENST00000371817 CABP2Q9NPB3 220 aa17.16■□□□□ 0.34
COL5A1-201ENST00000371817 DUSP27Q5VZP5 1158 aa17.16■□□□□ 0.34
COL5A1-201ENST00000371817 CRCPO75575 148 aa17.16■□□□□ 0.34
COL5A1-201ENST00000371817 PDCD2Q16342 344 aaPredicted RBP17.15■□□□□ 0.34
COL5A1-201ENST00000371817 ALDH1L2Q3SY69 923 aa17.15■□□□□ 0.34
COL5A1-201ENST00000371817 LCA5Q86VQ0 697 aa17.15■□□□□ 0.34
COL5A1-201ENST00000371817 TMED1Q13445 227 aa17.15■□□□□ 0.34
COL5A1-201ENST00000371817 ORC3Q9UBD5 711 aaPredicted RBP17.15■□□□□ 0.34
COL5A1-201ENST00000371817 TBCAO75347 108 aaKnown RBP17.15■□□□□ 0.34
COL5A1-201ENST00000371817 EFCAB13Q8IY85 973 aa17.15■□□□□ 0.34
COL5A1-201ENST00000371817 SPINK5Q9NQ38 1064 aaPredicted RBP17.15■□□□□ 0.34
COL5A1-201ENST00000371817 CLTAP09496 248 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms