RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TFIP11Q9UBB9 837 aaKnown RBP24.62■■□□□ 1.53
CCDC88B-203ENST00000359902 RIC1Q4ADV7 1423 aa24.62■■□□□ 1.53
CCDC88B-203ENST00000359902 LRP6O75581 1613 aa24.61■■□□□ 1.53
CCDC88B-203ENST00000359902 HCLS1P14317 486 aaPredicted RBP24.61■■□□□ 1.53
CCDC88B-203ENST00000359902 APOBRQ0VD83 1088 aa24.61■■□□□ 1.53
CCDC88B-203ENST00000359902 LDHAL6AQ6ZMR3 332 aa24.61■■□□□ 1.53
CCDC88B-203ENST00000359902 DDX11Q96FC9 970 aa24.61■■□□□ 1.53
CCDC88B-203ENST00000359902 FOXP2O15409 715 aa24.61■■□□□ 1.53
CCDC88B-203ENST00000359902 CTSWP56202 376 aa24.61■■□□□ 1.53
CCDC88B-203ENST00000359902 ATP2B3Q16720 1220 aa24.61■■□□□ 1.53
CCDC88B-203ENST00000359902 METTL24Q5JXM2 366 aa24.61■■□□□ 1.53
CCDC88B-203ENST00000359902 RESTQ13127 1097 aa24.6■■□□□ 1.53
CCDC88B-203ENST00000359902 SYTL4Q96C24 671 aaPredicted RBP24.6■■□□□ 1.53
CCDC88B-203ENST00000359902 ABCC12Q96J65 1359 aa24.6■■□□□ 1.53
CCDC88B-203ENST00000359902 IRS4O14654 1257 aaPredicted RBP24.6■■□□□ 1.53
CCDC88B-203ENST00000359902 WASHC4Q2M389 1173 aa24.6■■□□□ 1.53
CCDC88B-203ENST00000359902 NSUN7Q8NE18 718 aaKnown RBP24.6■■□□□ 1.53
CCDC88B-203ENST00000359902 CCDC39Q9UFE4 941 aa24.6■■□□□ 1.53
CCDC88B-203ENST00000359902 CTDNEP1O95476 244 aa24.59■■□□□ 1.53
CCDC88B-203ENST00000359902 PI16Q6UXB8 463 aa24.59■■□□□ 1.53
CCDC88B-203ENST00000359902 LEO1Q8WVC0 666 aaPredicted RBP24.59■■□□□ 1.53
CCDC88B-203ENST00000359902 SPATA32Q96LK8 384 aa24.59■■□□□ 1.53
CCDC88B-203ENST00000359902 ANKRD18BA2A2Z9 1011 aa24.58■■□□□ 1.53
CCDC88B-203ENST00000359902 NAP1L5Q96NT1 182 aaPredicted RBP24.58■■□□□ 1.53
CCDC88B-203ENST00000359902 TRMT112Q9UI30 125 aaKnown RBP24.58■■□□□ 1.53
CCDC88B-203ENST00000359902 KAT6BQ8WYB5 2073 aa24.58■■□□□ 1.53
CCDC88B-203ENST00000359902 H3BQV1 296 aa24.58■■□□□ 1.53
CCDC88B-203ENST00000359902 LIG1P18858 919 aa24.58■■□□□ 1.53
CCDC88B-203ENST00000359902 IFFO2Q5TF58 517 aa24.58■■□□□ 1.53
CCDC88B-203ENST00000359902 CTNNA3Q9UI47 895 aa24.58■■□□□ 1.53
CCDC88B-203ENST00000359902 ERVV-1B6SEH8 477 aa24.57■■□□□ 1.52
CCDC88B-203ENST00000359902 APPBP2Q92624 585 aa24.57■■□□□ 1.52
CCDC88B-203ENST00000359902 ZKSCAN5Q9Y2L8 839 aa24.57■■□□□ 1.52
CCDC88B-203ENST00000359902 CHST3Q7LGC8 479 aa24.57■■□□□ 1.52
CCDC88B-203ENST00000359902 PUS7LQ9H0K6 701 aaKnown RBP24.57■■□□□ 1.52
CCDC88B-203ENST00000359902 ZSCAN16Q9H4T2 348 aaPredicted RBP24.57■■□□□ 1.52
CCDC88B-203ENST00000359902 CNNM1Q9NRU3 951 aa24.57■■□□□ 1.52
CCDC88B-203ENST00000359902 TBC1D2BQ9UPU7 963 aa24.57■■□□□ 1.52
CCDC88B-203ENST00000359902 IL6STP40189 918 aaPredicted RBP24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 FBXL16Q8N461 479 aa24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 VGLL2Q8N8G2 317 aa24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 ZNF274Q96GC6 653 aaPredicted RBP24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 ANKRD36CQ5JPF3 1778 aa24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 FGAP02671 866 aa24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 PDIA3P30101 505 aaKnown RBP24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 MCAMP43121 646 aa24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 CCT2P78371 535 aaKnown RBP24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 DZIP3Q86Y13 1208 aaKnown RBP24.56■■□□□ 1.52
CCDC88B-203ENST00000359902 PTPDC1A2A3K4 754 aa24.55■■□□□ 1.52
CCDC88B-203ENST00000359902 PDE8AO60658 829 aa24.55■■□□□ 1.52
CCDC88B-203ENST00000359902 HMGN5P82970 282 aaKnown RBP24.55■■□□□ 1.52
CCDC88B-203ENST00000359902 PLCH1Q4KWH8 1693 aa24.55■■□□□ 1.52
CCDC88B-203ENST00000359902 ZNF500O60304 480 aaPredicted RBP24.55■■□□□ 1.52
CCDC88B-203ENST00000359902 ZNF512BQ96KM6 892 aaPredicted RBP24.55■■□□□ 1.52
CCDC88B-203ENST00000359902 USP25Q9UHP3 1055 aa24.55■■□□□ 1.52
CCDC88B-203ENST00000359902 NWD2Q9ULI1 1742 aa24.54■■□□□ 1.52
CCDC88B-203ENST00000359902 NUP98P52948 1817 aa24.54■■□□□ 1.52
CCDC88B-203ENST00000359902 MCM5P33992 734 aa24.54■■□□□ 1.52
CCDC88B-203ENST00000359902 IMMTQ16891 758 aaKnown RBP24.54■■□□□ 1.52
CCDC88B-203ENST00000359902 NAA16Q6N069 864 aaPredicted RBP24.54■■□□□ 1.52
CCDC88B-203ENST00000359902 ZNF34Q8IZ26 560 aa24.54■■□□□ 1.52
CCDC88B-203ENST00000359902 NCOA5Q9HCD5 579 aaKnown RBP24.54■■□□□ 1.52
CCDC88B-203ENST00000359902 COL16A1Q07092 1604 aaPredicted RBP24.54■■□□□ 1.52
CCDC88B-203ENST00000359902 UBN2Q6ZU65 1347 aa24.54■■□□□ 1.52
CCDC88B-203ENST00000359902 GOLGA6L4A6NEF3 574 aa24.53■■□□□ 1.52
CCDC88B-203ENST00000359902 MYH3P11055 1940 aa24.53■■□□□ 1.52
CCDC88B-203ENST00000359902 EVCP57679 992 aa24.53■■□□□ 1.52
CCDC88B-203ENST00000359902 HAND2P61296 217 aa24.53■■□□□ 1.52
CCDC88B-203ENST00000359902 PGBD1Q96JS3 809 aa24.53■■□□□ 1.52
CCDC88B-203ENST00000359902 NUP62CLQ9H1M0 184 aa24.53■■□□□ 1.52
CCDC88B-203ENST00000359902 SALL1Q9NSC2 1324 aa24.53■■□□□ 1.52
CCDC88B-203ENST00000359902 PDE8BO95263 885 aa24.52■■□□□ 1.52
CCDC88B-203ENST00000359902 AKAP11Q9UKA4 1901 aa24.52■■□□□ 1.52
CCDC88B-203ENST00000359902 CCDC192P0DO97 292 aa24.52■■□□□ 1.52
CCDC88B-203ENST00000359902 DACT1Q9NYF0 836 aa24.52■■□□□ 1.52
CCDC88B-203ENST00000359902 NAP1L2Q9ULW6 460 aaPredicted RBP24.52■■□□□ 1.52
CCDC88B-203ENST00000359902 GPAA1O43292 621 aa24.51■■□□□ 1.51
CCDC88B-203ENST00000359902 KDM4AO75164 1064 aa24.51■■□□□ 1.51
CCDC88B-203ENST00000359902 ADD1P35611 737 aaKnown RBP24.51■■□□□ 1.51
CCDC88B-203ENST00000359902 MAP3K11Q16584 847 aa24.51■■□□□ 1.51
CCDC88B-203ENST00000359902 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.51■■□□□ 1.518e-7■■■■□ 22.3
CCDC88B-203ENST00000359902 KIF3AQ9Y496 699 aa24.51■■□□□ 1.51
CCDC88B-203ENST00000359902 ADCY5O95622 1261 aa24.51■■□□□ 1.51
CCDC88B-203ENST00000359902 CAMK4Q16566 473 aa24.51■■□□□ 1.51
CCDC88B-203ENST00000359902 GPHNQ9NQX3 736 aaPredicted RBP24.51■■□□□ 1.51
CCDC88B-203ENST00000359902 CFAP45Q9UL16 551 aa24.51■■□□□ 1.51
CCDC88B-203ENST00000359902 OFD1O75665 1012 aa24.5■■□□□ 1.51
CCDC88B-203ENST00000359902 PTMAP06454 111 aaKnown RBP24.5■■□□□ 1.51
CCDC88B-203ENST00000359902 COL22A1Q8NFW1 1626 aaPredicted RBP24.5■■□□□ 1.51
CCDC88B-203ENST00000359902 ADD2P35612 726 aa24.5■■□□□ 1.51
CCDC88B-203ENST00000359902 MYH7P12883 1935 aa24.5■■□□□ 1.51
CCDC88B-203ENST00000359902 ROBO1Q9Y6N7 1651 aa24.49■■□□□ 1.51
CCDC88B-203ENST00000359902 EIF5P55010 431 aaKnown RBP24.49■■□□□ 1.51
CCDC88B-203ENST00000359902 ZSCAN25Q6NSZ9 544 aa24.49■■□□□ 1.51
CCDC88B-203ENST00000359902 MB21D2Q8IYB1 491 aaPredicted RBP24.49■■□□□ 1.51
CCDC88B-203ENST00000359902 CHMP4CQ96CF2 233 aa24.49■■□□□ 1.51
CCDC88B-203ENST00000359902 DDX19AQ9NUU7 478 aaKnown RBP24.49■■□□□ 1.51
CCDC88B-203ENST00000359902 FOSBP53539 338 aa24.49■■□□□ 1.51
CCDC88B-203ENST00000359902 TTF1Q15361 905 aaPredicted RBP24.49■■□□□ 1.51
CCDC88B-203ENST00000359902 PIH1D3Q9NQM4 214 aaKnown RBP24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms