RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 MKRN1Q9UHC7 482 aaKnown RBP18.35■□□□□ 0.53
NPHP3-201ENST00000337331 TTC21AQ8NDW8 1320 aa18.35■□□□□ 0.53
NPHP3-201ENST00000337331 ALDH1L1O75891 902 aa18.35■□□□□ 0.53
NPHP3-201ENST00000337331 PALD1Q9ULE6 856 aa18.35■□□□□ 0.53
NPHP3-201ENST00000337331 MAGEA9P43362 315 aa18.35■□□□□ 0.53
NPHP3-201ENST00000337331 LMBR1LQ6UX01 489 aa18.35■□□□□ 0.53
NPHP3-201ENST00000337331 RNF41Q9H4P4 317 aaPredicted RBP18.35■□□□□ 0.53
NPHP3-201ENST00000337331 ADAM21Q9UKJ8 722 aa18.35■□□□□ 0.53
NPHP3-201ENST00000337331 KLF18A0A0U1RQI7 1052 aa18.34■□□□□ 0.53
NPHP3-201ENST00000337331 SLC5A1P13866 664 aa18.34■□□□□ 0.53
NPHP3-201ENST00000337331 INPP5BP32019 993 aa18.34■□□□□ 0.53
NPHP3-201ENST00000337331 MAP9Q49MG5 647 aa18.34■□□□□ 0.53
NPHP3-201ENST00000337331 NCOA7Q8NI08 942 aa18.34■□□□□ 0.53
NPHP3-201ENST00000337331 CHMLP26374 656 aa18.34■□□□□ 0.53
NPHP3-201ENST00000337331 ATP2C2O75185 946 aa18.34■□□□□ 0.53
NPHP3-201ENST00000337331 CYP2E1P05181 493 aaPredicted RBP18.34■□□□□ 0.53
NPHP3-201ENST00000337331 SSR1P43307 286 aaKnown RBP18.34■□□□□ 0.53
NPHP3-201ENST00000337331 UBASH3AP57075 661 aa18.34■□□□□ 0.53
NPHP3-201ENST00000337331 SLC20A2Q08357 652 aa18.34■□□□□ 0.53
NPHP3-201ENST00000337331 UHRF1BP1Q6BDS2 1440 aa18.33■□□□□ 0.53
NPHP3-201ENST00000337331 METAP2P50579 478 aaKnown RBP eCLIP18.33■□□□□ 0.53
NPHP3-201ENST00000337331 RBM5P52756 815 aaKnown RBP eCLIP18.33■□□□□ 0.53
NPHP3-201ENST00000337331 EP400NLQ6ZTU2 488 aa18.33■□□□□ 0.53
NPHP3-201ENST00000337331 LINS1Q8NG48 757 aa18.33■□□□□ 0.53
NPHP3-201ENST00000337331 PDE11AQ9HCR9 933 aa18.33■□□□□ 0.53
NPHP3-201ENST00000337331 ITSN2Q9NZM3 1697 aa18.33■□□□□ 0.52
NPHP3-201ENST00000337331 CCDC102BQ68D86 513 aa18.33■□□□□ 0.52
NPHP3-201ENST00000337331 G2E3Q7L622 706 aa18.33■□□□□ 0.52
NPHP3-201ENST00000337331 MRVI1Q9Y6F6 885 aa18.33■□□□□ 0.52
NPHP3-201ENST00000337331 USP27XA6NNY8 438 aa18.33■□□□□ 0.52
NPHP3-201ENST00000337331 EIF3CLB5ME19 914 aaKnown RBP18.33■□□□□ 0.52
NPHP3-201ENST00000337331 EYA1Q99502 592 aa18.33■□□□□ 0.52
NPHP3-201ENST00000337331 EIF3CQ99613 913 aaKnown RBP18.33■□□□□ 0.52
NPHP3-201ENST00000337331 CWF19L2Q2TBE0 894 aaKnown RBP18.32■□□□□ 0.52
NPHP3-201ENST00000337331 MCTP2Q6DN12 878 aa18.32■□□□□ 0.52
NPHP3-201ENST00000337331 IQCEQ6IPM2 695 aa18.32■□□□□ 0.52
NPHP3-201ENST00000337331 SRLQ86TD4 932 aa18.32■□□□□ 0.52
NPHP3-201ENST00000337331 CCDC148Q8NFR7 591 aa18.32■□□□□ 0.52
NPHP3-201ENST00000337331 ZNF652Q9Y2D9 606 aa18.32■□□□□ 0.52
NPHP3-201ENST00000337331 NPC1L1Q9UHC9 1359 aa18.32■□□□□ 0.52
NPHP3-201ENST00000337331 ELP1O95163 1332 aa18.32■□□□□ 0.52
NPHP3-201ENST00000337331 ETF1P62495 437 aaKnown RBP18.32■□□□□ 0.52
NPHP3-201ENST00000337331 GOLGA6L9A6NEM1 432 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 NMIQ13287 307 aaPredicted RBP18.31■□□□□ 0.52
NPHP3-201ENST00000337331 SLC26A6Q9BXS9 759 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 TRIM35Q9UPQ4 493 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 NLRP5P59047 1200 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 Q6ZUG5 572 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 EXOC4Q96A65 974 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 WDHD1O75717 1129 aaPredicted RBP18.31■□□□□ 0.52
NPHP3-201ENST00000337331 GUCY2CP25092 1073 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 SCLT1Q96NL6 688 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 CXorf56Q9H5V9 222 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 LZTFL1Q9NQ48 299 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 ERCC6L2Q5T890 1561 aa18.31■□□□□ 0.52
NPHP3-201ENST00000337331 SOS1Q07889 1333 aaPredicted RBP18.31■□□□□ 0.52
NPHP3-201ENST00000337331 MCMDC2Q4G0Z9 681 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 PHAXQ9H814 394 aaKnown RBP18.3■□□□□ 0.52
NPHP3-201ENST00000337331 SEPT11Q9NVA2 429 aaKnown RBP18.3■□□□□ 0.52
NPHP3-201ENST00000337331 CCDC194A0A1B0GVG4 234 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 EZRP15311 586 aaKnown RBP18.3■□□□□ 0.52
NPHP3-201ENST00000337331 SPA17Q15506 151 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 MICALCLQ6ZW33 695 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 AFAP1L1Q8TED9 768 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 SYKP43405 635 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 CLNS1AP54105 237 aaKnown RBP18.3■□□□□ 0.52
NPHP3-201ENST00000337331 DZIP1Q86YF9 867 aaKnown RBP18.3■□□□□ 0.52
NPHP3-201ENST00000337331 LRRC59Q96AG4 307 aaKnown RBP18.3■□□□□ 0.52
NPHP3-201ENST00000337331 YY1AP1Q9H869 796 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 NPATQ14207 1427 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 CTAGE15A4D2H0 777 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 CTAGE8P0CG41 777 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 CATIPQ7Z7H3 387 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 CTAGE6Q86UF2 777 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 CTAGE4Q8IX94 777 aa18.3■□□□□ 0.52
NPHP3-201ENST00000337331 GPR161Q8N6U8 529 aaKnown RBP18.3■□□□□ 0.52
NPHP3-201ENST00000337331 NUP88Q99567 741 aaPredicted RBP18.3■□□□□ 0.52
NPHP3-201ENST00000337331 KAT6BQ8WYB5 2073 aa18.29■□□□□ 0.52
NPHP3-201ENST00000337331 CLSTN2Q9H4D0 955 aa18.29■□□□□ 0.52
NPHP3-201ENST00000337331 GOLGA6L7A0A1B0GV03 622 aa18.29■□□□□ 0.52
NPHP3-201ENST00000337331 TTF1Q15361 905 aaPredicted RBP18.29■□□□□ 0.52
NPHP3-201ENST00000337331 JPH2Q9BR39 696 aaPredicted RBP18.29■□□□□ 0.52
NPHP3-201ENST00000337331 A0A1B0GUA9 196 aa18.29■□□□□ 0.52
NPHP3-201ENST00000337331 ZEB2O60315 1214 aa18.29■□□□□ 0.52
NPHP3-201ENST00000337331 RBM6P78332 1123 aaKnown RBP18.29■□□□□ 0.52
NPHP3-201ENST00000337331 MMS22LQ6ZRQ5 1243 aa18.29■□□□□ 0.52
NPHP3-201ENST00000337331 EPC1Q9H2F5 836 aa18.29■□□□□ 0.52
NPHP3-201ENST00000337331 ZNF287Q9HBT7 754 aa18.29■□□□□ 0.52
NPHP3-201ENST00000337331 CPSF2Q9P2I0 782 aaKnown RBP18.29■□□□□ 0.52
NPHP3-201ENST00000337331 SEC63Q9UGP8 760 aaKnown RBP18.29■□□□□ 0.52
NPHP3-201ENST00000337331 AKAP4Q5JQC9 854 aa18.28■□□□□ 0.52
NPHP3-201ENST00000337331 MFSD6Q6ZSS7 791 aa18.28■□□□□ 0.52
NPHP3-201ENST00000337331 TAF4BQ92750 862 aa18.28■□□□□ 0.52
NPHP3-201ENST00000337331 FLT4P35916 1363 aa18.28■□□□□ 0.52
NPHP3-201ENST00000337331 MAP3K19Q56UN5 1328 aa18.28■□□□□ 0.52
NPHP3-201ENST00000337331 ZNF444Q8N0Y2 327 aaPredicted RBP18.28■□□□□ 0.52
NPHP3-201ENST00000337331 TNRQ92752 1358 aa18.28■□□□□ 0.52
NPHP3-201ENST00000337331 TTC41PQ6P2S7 1318 aa18.28■□□□□ 0.52
NPHP3-201ENST00000337331 EFCAB8A8MWE9 144 aa18.28■□□□□ 0.52
NPHP3-201ENST00000337331 SLFNL1Q499Z3 407 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms