RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TAF5LO75529 589 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 WDHD1O75717 1129 aaPredicted RBP11.66□□□□□ -0.54
CHD3-201ENST00000330494 EIF6P56537 245 aaKnown RBP11.66□□□□□ -0.54
CHD3-201ENST00000330494 PLEKHM2Q8IWE5 1019 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 ZSCAN12O43309 604 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 DYDC1Q8WWB3 177 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 DHX58Q96C10 678 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 UIMC1Q96RL1 719 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 RNF113AO15541 343 aaKnown RBP11.66□□□□□ -0.54
CHD3-201ENST00000330494 YEATS4O95619 227 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 SP4Q02446 784 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 ZNF790Q6PG37 636 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 TCOF1Q13428 1488 aaKnown RBP11.66□□□□□ -0.54
CHD3-201ENST00000330494 MCM7P33993 719 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 BBXQ8WY36 941 aaPredicted RBP11.66□□□□□ -0.54
CHD3-201ENST00000330494 HDAC9Q9UKV0 1011 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 AKNAD1Q5T1N1 836 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 PZPP20742 1482 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 SPDYE4A6NLX3 237 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 LUZP1Q86V48 1076 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 GJA3Q9Y6H8 435 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 TRPM2O94759 1503 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 ANAPC15P60006 121 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 KIF18AQ8NI77 898 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 ITGA6P23229 1130 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 PPM1FP49593 454 aaPredicted RBP11.65□□□□□ -0.54
CHD3-201ENST00000330494 CNNM2Q9H8M5 875 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 ZBTB40Q9NUA8 1239 aa11.65□□□□□ -0.54
CHD3-201ENST00000330494 ATP7AQ04656 1500 aa11.65□□□□□ -0.55
CHD3-201ENST00000330494 TRIM21P19474 475 aaKnown RBP11.65□□□□□ -0.55
CHD3-201ENST00000330494 CA8P35219 290 aa11.65□□□□□ -0.55
CHD3-201ENST00000330494 PRIM1P49642 420 aaKnown RBP11.65□□□□□ -0.55
CHD3-201ENST00000330494 VPS36Q86VN1 386 aa11.65□□□□□ -0.55
CHD3-201ENST00000330494 PTGS1P23219 599 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 TRAPPC3LQ5T215 181 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 LDHBP07195 334 aaKnown RBP11.64□□□□□ -0.55
CHD3-201ENST00000330494 ZSCAN16Q9H4T2 348 aaPredicted RBP11.64□□□□□ -0.55
CHD3-201ENST00000330494 TERF1P54274 439 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 IPO4Q8TEX9 1081 aaKnown RBP11.64□□□□□ -0.55
CHD3-201ENST00000330494 MBD4O95243 580 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 VTI1AQ96AJ9 217 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 RNF216Q9NWF9 866 aaPredicted RBP11.64□□□□□ -0.55
CHD3-201ENST00000330494 PKD2L1Q9P0L9 805 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 POLR3GO15318 223 aaPredicted RBP11.64□□□□□ -0.55
CHD3-201ENST00000330494 IL13P35225 146 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 ARID5AQ03989 594 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 FERMT2Q96AC1 680 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 DRC1Q96MC2 740 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 DCTPP1Q9H773 170 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 DACT1Q9NYF0 836 aa11.64□□□□□ -0.55
CHD3-201ENST00000330494 A0A1B0GUL7 405 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 GSTTP1A0A1W2PQM5 241 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 N4BP3O15049 544 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 TBCAO75347 108 aaKnown RBP11.63□□□□□ -0.55
CHD3-201ENST00000330494 UBASH3AP57075 661 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 DNAJC25Q9H1X3 360 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 RAB3GAP1Q15042 981 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 AOPEPQ8N6M6 819 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 FAM212AQ96EL1 285 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 CRACR2AQ9BSW2 395 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 ARMT1Q9H993 441 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 CCNL1Q9UK58 526 aaPredicted RBP11.63□□□□□ -0.55
CHD3-201ENST00000330494 SMARCC2Q8TAQ2 1214 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 CCDC97Q96F63 343 aaPredicted RBP11.63□□□□□ -0.55
CHD3-201ENST00000330494 USO1O60763 962 aaKnown RBP11.63□□□□□ -0.55
CHD3-201ENST00000330494 RGS22Q8NE09 1264 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 TNNI2P48788 182 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 ABCC2Q92887 1545 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 ZFYVE9O95405 1425 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 B4E1Z4 1266 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 CTNNA2P26232 953 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 PSMD1Q99460 953 aa11.63□□□□□ -0.55
CHD3-201ENST00000330494 CHMLP26374 656 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 STX17P56962 302 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 TMCO3Q6UWJ1 677 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 DPH6Q7L8W6 267 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 ABCA5Q8WWZ7 1642 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 NBPF7P0C2Y1 421 aaPredicted RBP11.62□□□□□ -0.55
CHD3-201ENST00000330494 TICAM2Q86XR7 235 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 TMEM87AQ8NBN3 555 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 GPCPD1Q9NPB8 672 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 UFL1O94874 794 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 F13A1P00488 732 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 CETN2P41208 172 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 ZYXQ15942 572 aaKnown RBP11.62□□□□□ -0.55
CHD3-201ENST00000330494 ZBTB7BO15156 539 aaPredicted RBP11.62□□□□□ -0.55
CHD3-201ENST00000330494 RUFY3Q7L099 469 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 JADE2Q9NQC1 790 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 TRIM35Q9UPQ4 493 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 ASIC1P78348 528 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 HLTFQ14527 1009 aaKnown RBP eCLIP11.62□□□□□ -0.55
CHD3-201ENST00000330494 SOS1Q07889 1333 aaPredicted RBP11.62□□□□□ -0.55
CHD3-201ENST00000330494 COL17A1Q9UMD9 1497 aaPredicted RBP11.62□□□□□ -0.55
CHD3-201ENST00000330494 FAM227BQ96M60 508 aa11.62□□□□□ -0.55
CHD3-201ENST00000330494 USP19O94966 1318 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 CCDC171Q6TFL3 1326 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 DDX21Q9NR30 783 aaKnown RBP eCLIP11.61□□□□□ -0.55
CHD3-201ENST00000330494 ADGBQ8N7X0 1667 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 IFFO1Q0D2I5 559 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 DISP1Q96F81 1524 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms