RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 XAGE2Q96GT9 111 aa20.49■□□□□ 0.87
COL9A1-201ENST00000320755 CLSTN2Q9H4D0 955 aa20.49■□□□□ 0.87
COL9A1-201ENST00000320755 SCARF1Q14162 830 aa20.49■□□□□ 0.87
COL9A1-201ENST00000320755 OTUD7BQ6GQQ9 843 aa20.49■□□□□ 0.87
COL9A1-201ENST00000320755 CFAP45Q9UL16 551 aa20.49■□□□□ 0.87
COL9A1-201ENST00000320755 PYCARDQ9ULZ3 195 aa20.49■□□□□ 0.87
COL9A1-201ENST00000320755 TERF1P54274 439 aa20.48■□□□□ 0.87
COL9A1-201ENST00000320755 TRIM5Q9C035 493 aa20.48■□□□□ 0.87
COL9A1-201ENST00000320755 ASAP1Q9ULH1 1129 aa20.48■□□□□ 0.87
COL9A1-201ENST00000320755 DNAJC10Q8IXB1 793 aa20.48■□□□□ 0.87
COL9A1-201ENST00000320755 PTGS1P23219 599 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 EXOSC10Q01780 885 aaKnown RBP20.47■□□□□ 0.87
COL9A1-201ENST00000320755 KCNF1Q9H3M0 494 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 ZSCAN16Q9H4T2 348 aaPredicted RBP20.47■□□□□ 0.87
COL9A1-201ENST00000320755 TMOD3Q9NYL9 352 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 ZNF165P49910 485 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 SMARCC2Q8TAQ2 1214 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 ERCC4Q92889 916 aaPredicted RBP20.47■□□□□ 0.87
COL9A1-201ENST00000320755 GPR108Q9NPR9 543 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 PALLDQ8WX93 1383 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 PDIA3P30101 505 aaKnown RBP20.47■□□□□ 0.87
COL9A1-201ENST00000320755 TCIRG1Q13488 830 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 USP28Q96RU2 1077 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 RFX7Q2KHR2 1363 aa20.47■□□□□ 0.87
COL9A1-201ENST00000320755 FAM177BA6PVY3 158 aa20.46■□□□□ 0.87
COL9A1-201ENST00000320755 ZAP70P43403 619 aa20.46■□□□□ 0.87
COL9A1-201ENST00000320755 CCAR1Q8IX12 1150 aaKnown RBP20.46■□□□□ 0.87
COL9A1-201ENST00000320755 CPDO75976 1380 aa20.45■□□□□ 0.86
COL9A1-201ENST00000320755 NRBP1Q9UHY1 535 aa20.45■□□□□ 0.86
COL9A1-201ENST00000320755 ME1P48163 572 aa20.45■□□□□ 0.86
COL9A1-201ENST00000320755 IFIT5Q13325 482 aaKnown RBP20.45■□□□□ 0.86
COL9A1-201ENST00000320755 GOLGA6L6A8MZA4 724 aa20.45■□□□□ 0.86
COL9A1-201ENST00000320755 CCDC186Q7Z3E2 898 aa20.45■□□□□ 0.86
COL9A1-201ENST00000320755 LLPHQ9BRT6 129 aaKnown RBP20.45■□□□□ 0.86
COL9A1-201ENST00000320755 HMGN5P82970 282 aaKnown RBP20.44■□□□□ 0.86
COL9A1-201ENST00000320755 UBE2Q2Q8WVN8 375 aa20.44■□□□□ 0.86
COL9A1-201ENST00000320755 PUS7LQ9H0K6 701 aaKnown RBP20.44■□□□□ 0.86
COL9A1-201ENST00000320755 ADD1P35611 737 aaKnown RBP20.44■□□□□ 0.86
COL9A1-201ENST00000320755 KIF6Q6ZMV9 814 aa20.44■□□□□ 0.86
COL9A1-201ENST00000320755 FGAP02671 866 aa20.43■□□□□ 0.86
COL9A1-201ENST00000320755 POLR3DP05423 398 aaPredicted RBP20.43■□□□□ 0.86
COL9A1-201ENST00000320755 ISCA1Q9BUE6 129 aa20.43■□□□□ 0.86
COL9A1-201ENST00000320755 GJB4Q9NTQ9 266 aa20.43■□□□□ 0.86
COL9A1-201ENST00000320755 KIF3AQ9Y496 699 aa20.43■□□□□ 0.86
COL9A1-201ENST00000320755 CIAO1O76071 339 aa20.43■□□□□ 0.86
COL9A1-201ENST00000320755 LRMPQ12912 555 aa20.43■□□□□ 0.86
COL9A1-201ENST00000320755 METTL24Q5JXM2 366 aa20.43■□□□□ 0.86
COL9A1-201ENST00000320755 PDCL3Q9H2J4 239 aa20.43■□□□□ 0.86
COL9A1-201ENST00000320755 A0A0G2JS52 829 aa20.42■□□□□ 0.86
COL9A1-201ENST00000320755 SYTL4Q96C24 671 aaPredicted RBP20.42■□□□□ 0.86
COL9A1-201ENST00000320755 GOLPH3LQ9H4A5 285 aa20.42■□□□□ 0.86
COL9A1-201ENST00000320755 IMMTQ16891 758 aaKnown RBP20.42■□□□□ 0.86
COL9A1-201ENST00000320755 NAA16Q6N069 864 aaPredicted RBP20.42■□□□□ 0.86
COL9A1-201ENST00000320755 LDHAL6AQ6ZMR3 332 aa20.42■□□□□ 0.86
COL9A1-201ENST00000320755 AKAP2Q9Y2D5 859 aa20.42■□□□□ 0.86
COL9A1-201ENST00000320755 HLFQ16534 295 aa20.42■□□□□ 0.86
COL9A1-201ENST00000320755 CCDC73Q6ZRK6 1079 aa20.42■□□□□ 0.86
COL9A1-201ENST00000320755 STRCP1A6NGW2 1772 aa20.41■□□□□ 0.86
COL9A1-201ENST00000320755 KIAA1524Q8TCG1 905 aa20.41■□□□□ 0.86
COL9A1-201ENST00000320755 PIGBQ92521 554 aa20.41■□□□□ 0.86
COL9A1-201ENST00000320755 CARD10Q9BWT7 1032 aa20.41■□□□□ 0.86
COL9A1-201ENST00000320755 KLF18A0A0U1RQI7 1052 aa20.41■□□□□ 0.86
COL9A1-201ENST00000320755 APPP05067 770 aa20.41■□□□□ 0.86
COL9A1-201ENST00000320755 SLAIN2Q9P270 581 aa20.41■□□□□ 0.86
COL9A1-201ENST00000320755 PRC1O43663 620 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 GLIPR1L2Q4G1C9 344 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 FSIP1Q8NA03 581 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 CNNM1Q9NRU3 951 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 RCOR1Q9UKL0 485 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 DYNC1I1O14576 645 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 FDPSP14324 419 aaKnown RBP20.4■□□□□ 0.86
COL9A1-201ENST00000320755 NKX1-1Q15270 411 aaPredicted RBP20.4■□□□□ 0.86
COL9A1-201ENST00000320755 GREM2Q9H772 168 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 ATG3Q9NT62 314 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 GOLGA8BA8MQT2 603 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 FOXP2O15409 715 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 KINO60870 393 aaKnown RBP20.4■□□□□ 0.86
COL9A1-201ENST00000320755 ATP2B3Q16720 1220 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 C11orf57Q6ZUT1 292 aaPredicted RBP20.4■□□□□ 0.86
COL9A1-201ENST00000320755 ZNF274Q96GC6 653 aaPredicted RBP20.4■□□□□ 0.86
COL9A1-201ENST00000320755 ZNF396Q96N95 335 aaPredicted RBP20.4■□□□□ 0.86
COL9A1-201ENST00000320755 CTNNA3Q9UI47 895 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 DENND2AQ9ULE3 1009 aa20.4■□□□□ 0.86
COL9A1-201ENST00000320755 PKD1L3Q7Z443 1732 aa20.39■□□□□ 0.86
COL9A1-201ENST00000320755 GOLGA6L19H0YKK7 550 aa20.39■□□□□ 0.85
COL9A1-201ENST00000320755 RALYLQ86SE5 291 aaKnown RBP20.39■□□□□ 0.85
COL9A1-201ENST00000320755 AGXT2Q9BYV1 514 aa20.39■□□□□ 0.85
COL9A1-201ENST00000320755 DCCP43146 1447 aa20.39■□□□□ 0.85
COL9A1-201ENST00000320755 CPLX1O14810 134 aa20.39■□□□□ 0.85
COL9A1-201ENST00000320755 IDH1O75874 414 aaKnown RBP20.39■□□□□ 0.85
COL9A1-201ENST00000320755 ITGA6P23229 1130 aa20.39■□□□□ 0.85
COL9A1-201ENST00000320755 SF3A1Q15459 793 aaKnown RBP20.39■□□□□ 0.85
COL9A1-201ENST00000320755 RBM43Q6ZSC3 357 aaKnown RBP20.39■□□□□ 0.85
COL9A1-201ENST00000320755 ILDR1Q86SU0 546 aaPredicted RBP20.39■□□□□ 0.85
COL9A1-201ENST00000320755 CARMIL3Q8ND23 1372 aa20.39■□□□□ 0.85
COL9A1-201ENST00000320755 GLI3P10071 1580 aa20.38■□□□□ 0.85
COL9A1-201ENST00000320755 GPAA1O43292 621 aa20.38■□□□□ 0.85
COL9A1-201ENST00000320755 ZNF75DP51815 510 aa20.38■□□□□ 0.85
COL9A1-201ENST00000320755 LRRFIP1Q32MZ4 808 aaKnown RBP20.38■□□□□ 0.85
COL9A1-201ENST00000320755 VSIG10Q8N0Z9 540 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms