RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 NBPF10Q6P3W6 841 aaKnown RBP25.79■■□□□ 1.72
SHMT1-201ENST00000316694 NBPF15Q8N660 670 aa25.79■■□□□ 1.72
SHMT1-201ENST00000316694 ZNF594Q96JF6 807 aaPredicted RBP25.79■■□□□ 1.72
SHMT1-201ENST00000316694 PKNOX2Q96KN3 472 aa25.79■■□□□ 1.72
SHMT1-201ENST00000316694 RCOR1Q9UKL0 485 aa25.79■■□□□ 1.72
SHMT1-201ENST00000316694 CCDC73Q6ZRK6 1079 aa25.79■■□□□ 1.72
SHMT1-201ENST00000316694 TTLL7Q6ZT98 887 aa25.79■■□□□ 1.72
SHMT1-201ENST00000316694 CAVIN2O95810 425 aa25.78■■□□□ 1.72
SHMT1-201ENST00000316694 LRRC24Q50LG9 513 aa25.78■■□□□ 1.72
SHMT1-201ENST00000316694 CWC25Q9NXE8 425 aaPredicted RBP25.78■■□□□ 1.72
SHMT1-201ENST00000316694 IFIT1P09914 478 aaKnown RBP25.78■■□□□ 1.72
SHMT1-201ENST00000316694 CCDC144BQ3MJ40 725 aa25.77■■□□□ 1.72
SHMT1-201ENST00000316694 CCDC144CPQ8IYA2 1237 aa25.77■■□□□ 1.72
SHMT1-201ENST00000316694 MAST3O60307 1309 aa25.77■■□□□ 1.72
SHMT1-201ENST00000316694 MYH15Q9Y2K3 1946 aa25.77■■□□□ 1.72
SHMT1-201ENST00000316694 STRCP1A6NGW2 1772 aa25.77■■□□□ 1.72
SHMT1-201ENST00000316694 A0A087WWV3 80 aa25.77■■□□□ 1.72
SHMT1-201ENST00000316694 IL15P40933 162 aaPredicted RBP25.77■■□□□ 1.72
SHMT1-201ENST00000316694 ME1P48163 572 aa25.77■■□□□ 1.72
SHMT1-201ENST00000316694 IQCB1Q15051 598 aa25.77■■□□□ 1.72
SHMT1-201ENST00000316694 STX1AQ16623 288 aa25.77■■□□□ 1.72
SHMT1-201ENST00000316694 CACTINQ8WUQ7 758 aaKnown RBP25.77■■□□□ 1.72
SHMT1-201ENST00000316694 KINO60870 393 aaKnown RBP25.76■■□□□ 1.71
SHMT1-201ENST00000316694 ZNF396Q96N95 335 aaPredicted RBP25.76■■□□□ 1.71
SHMT1-201ENST00000316694 TNS3Q68CZ2 1445 aa25.76■■□□□ 1.71
SHMT1-201ENST00000316694 CTAGE5O15320 804 aa25.76■■□□□ 1.71
SHMT1-201ENST00000316694 PDIA3P30101 505 aaKnown RBP25.76■■□□□ 1.71
SHMT1-201ENST00000316694 TTLL5Q6EMB2 1281 aa25.76■■□□□ 1.71
SHMT1-201ENST00000316694 AGXT2Q9BYV1 514 aa25.76■■□□□ 1.71
SHMT1-201ENST00000316694 ZBTB3Q9H5J0 574 aa25.76■■□□□ 1.71
SHMT1-201ENST00000316694 RNF113AO15541 343 aaKnown RBP25.75■■□□□ 1.71
SHMT1-201ENST00000316694 SNW1Q13573 536 aaKnown RBP25.75■■□□□ 1.71
SHMT1-201ENST00000316694 A0A1B0GUL7 405 aa25.75■■□□□ 1.71
SHMT1-201ENST00000316694 GPR108Q9NPR9 543 aa25.75■■□□□ 1.71
SHMT1-201ENST00000316694 SPATA31A3Q5VYP0 1347 aa25.74■■□□□ 1.71
SHMT1-201ENST00000316694 EYA2O00167 538 aa25.74■■□□□ 1.71
SHMT1-201ENST00000316694 PPP4R3BQ5MIZ7 849 aa25.74■■□□□ 1.71
SHMT1-201ENST00000316694 SALL1Q9NSC2 1324 aa25.74■■□□□ 1.71
SHMT1-201ENST00000316694 BECN2A8MW95 431 aa25.74■■□□□ 1.71
SHMT1-201ENST00000316694 M0R2C6 588 aa25.74■■□□□ 1.71
SHMT1-201ENST00000316694 FKBP4Q02790 459 aaKnown RBP eCLIP25.74■■□□□ 1.71
SHMT1-201ENST00000316694 FSIP1Q8NA03 581 aa25.74■■□□□ 1.71
SHMT1-201ENST00000316694 CADPS2Q86UW7 1296 aa25.73■■□□□ 1.71
SHMT1-201ENST00000316694 ERCC4Q92889 916 aaPredicted RBP25.73■■□□□ 1.71
SHMT1-201ENST00000316694 FBXW7Q969H0 707 aa25.73■■□□□ 1.71
SHMT1-201ENST00000316694 PKD1L3Q7Z443 1732 aa25.73■■□□□ 1.71
SHMT1-201ENST00000316694 A1BGP04217 495 aa25.73■■□□□ 1.71
SHMT1-201ENST00000316694 FAM160A1Q05DH4 1040 aa25.73■■□□□ 1.71
SHMT1-201ENST00000316694 ILDR1Q86SU0 546 aaPredicted RBP25.73■■□□□ 1.71
SHMT1-201ENST00000316694 PUS3Q9BZE2 481 aaKnown RBP25.73■■□□□ 1.71
SHMT1-201ENST00000316694 PRDM10Q9NQV6 1147 aa25.73■■□□□ 1.71
SHMT1-201ENST00000316694 TNNT1P13805 278 aa25.72■■□□□ 1.71
SHMT1-201ENST00000316694 CDC25BP30305 580 aa25.72■■□□□ 1.71
SHMT1-201ENST00000316694 ZNF274Q96GC6 653 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-201ENST00000316694 CARMIL3Q8ND23 1372 aa25.72■■□□□ 1.71
SHMT1-201ENST00000316694 TPD52L1Q16890 204 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-201ENST00000316694 PDCL2Q8N4E4 241 aa25.72■■□□□ 1.71
SHMT1-201ENST00000316694 GPHNQ9NQX3 736 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-201ENST00000316694 LAMB4A4D0S4 1761 aa25.71■■□□□ 1.71
SHMT1-201ENST00000316694 HAND2P61296 217 aa25.71■■□□□ 1.71
SHMT1-201ENST00000316694 ARID5BQ14865 1188 aa25.71■■□□□ 1.71
SHMT1-201ENST00000316694 ATL3Q6DD88 541 aa25.71■■□□□ 1.71
SHMT1-201ENST00000316694 SARM1Q6SZW1 724 aa25.71■■□□□ 1.71
SHMT1-201ENST00000316694 ENGASEQ8NFI3 743 aa25.71■■□□□ 1.71
SHMT1-201ENST00000316694 OSBP2Q969R2 916 aa25.71■■□□□ 1.71
SHMT1-201ENST00000316694 GLI3P10071 1580 aa25.71■■□□□ 1.71
SHMT1-201ENST00000316694 CTIFO43310 598 aaKnown RBP25.7■■□□□ 1.7
SHMT1-201ENST00000316694 ANO10Q9NW15 660 aa25.7■■□□□ 1.7
SHMT1-201ENST00000316694 ABCC6O95255 1503 aa25.7■■□□□ 1.7
SHMT1-201ENST00000316694 FDPSP14324 419 aaKnown RBP25.69■■□□□ 1.7
SHMT1-201ENST00000316694 WASHC4Q2M389 1173 aa25.69■■□□□ 1.7
SHMT1-201ENST00000316694 GORABQ5T7V8 394 aa25.69■■□□□ 1.7
SHMT1-201ENST00000316694 OTUD7BQ6GQQ9 843 aa25.69■■□□□ 1.7
SHMT1-201ENST00000316694 LRRC8AQ8IWT6 810 aa25.69■■□□□ 1.7
SHMT1-201ENST00000316694 MRFAP1L1Q96HT8 127 aa25.69■■□□□ 1.7
SHMT1-201ENST00000316694 CBX1P83916 185 aa25.69■■□□□ 1.7
SHMT1-201ENST00000316694 DHX40Q8IX18 779 aaKnown RBP25.69■■□□□ 1.7
SHMT1-201ENST00000316694 SMAP1Q8IYB5 467 aaPredicted RBP25.69■■□□□ 1.7
SHMT1-201ENST00000316694 PCDHA7Q9UN72 937 aa25.69■■□□□ 1.7
SHMT1-201ENST00000316694 DCCP43146 1447 aa25.68■■□□□ 1.7
SHMT1-201ENST00000316694 TOM1L2Q6ZVM7 507 aa25.68■■□□□ 1.7
SHMT1-201ENST00000316694 CCDC191Q8NCU4 936 aa25.68■■□□□ 1.7
SHMT1-201ENST00000316694 CEP126Q9P2H0 1117 aa25.68■■□□□ 1.7
SHMT1-201ENST00000316694 ZCRB1Q8TBF4 217 aaKnown RBP25.68■■□□□ 1.7
SHMT1-201ENST00000316694 CPDO75976 1380 aa25.67■■□□□ 1.7
SHMT1-201ENST00000316694 SMTNL1A8MU46 457 aa25.67■■□□□ 1.7
SHMT1-201ENST00000316694 FILIP1Q7Z7B0 1213 aa25.67■■□□□ 1.7
SHMT1-201ENST00000316694 CEP57L1Q8IYX8 460 aa25.67■■□□□ 1.7
SHMT1-201ENST00000316694 ANKRD7Q92527 254 aa25.67■■□□□ 1.7
SHMT1-201ENST00000316694 SDF4Q9BRK5 362 aa25.67■■□□□ 1.7
SHMT1-201ENST00000316694 A0A1B0GVL5 298 aa25.66■■□□□ 1.7
SHMT1-201ENST00000316694 ATP2B3Q16720 1220 aa25.66■■□□□ 1.7
SHMT1-201ENST00000316694 HSP90AB3PQ58FF7 597 aa25.66■■□□□ 1.7
SHMT1-201ENST00000316694 TTC39AQ5SRH9 613 aa25.66■■□□□ 1.7
SHMT1-201ENST00000316694 AOPEPQ8N6M6 819 aa25.66■■□□□ 1.7
SHMT1-201ENST00000316694 MRPS27Q92552 414 aaKnown RBP25.66■■□□□ 1.7
SHMT1-201ENST00000316694 TJP1Q07157 1748 aa25.66■■□□□ 1.7
SHMT1-201ENST00000316694 TICAM2Q86XR7 235 aa25.66■■□□□ 1.7
SHMT1-201ENST00000316694 RAB11FIP4Q86YS3 637 aa25.66■■□□□ 1.7
SHMT1-201ENST00000316694 ZNF592Q92610 1267 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms