RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 NDUFAB1O14561 156 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 TUBB4AP04350 444 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 CCDC25Q86WR0 208 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 LRRD1A4D1F6 860 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 U2AF2P26368 475 aaKnown RBP eCLIP12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 NUDCD3Q8IVD9 361 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 POLA1P09884 1462 aaPredicted RBP12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 TMEM266Q2M3C6 531 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 TBC1D31Q96DN5 1066 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 CACNA1FO60840 1977 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 RASSF2P50749 326 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 C17orf53Q8N3J3 647 aaPredicted RBP12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 GRIN2BQ13224 1484 aa12.61□□□□□ -0.39
HDGFL3-201ENST00000299633 NLRP6P59044 892 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 JAKMIP1Q96N16 626 aaKnown RBP12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 CNNM3Q8NE01 707 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 PUF60Q9UHX1 559 aaKnown RBP12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 ZNF638Q14966 1978 aaKnown RBP12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 GOLGA6CA6NDK9 693 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 GOLGA6DP0CG33 693 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 UVSSAQ2YD98 709 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 FNBP4Q8N3X1 1017 aaPredicted RBP12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 GOLGA6AQ9NYA3 693 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 DNMBPQ6XZF7 1577 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 SPAG17Q6Q759 2223 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 ANKFY1Q9P2R3 1169 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 TMEM57Q8N5G2 664 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 SLC12A5Q9H2X9 1139 aa12.6□□□□□ -0.39
HDGFL3-201ENST00000299633 I3L4J1 428 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 HDGFL1Q5TGJ6 251 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 ARID1BQ8NFD5 2236 aaPredicted RBP12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 MAP3K21Q5TCX8 1036 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 HELBQ8NG08 1087 aaPredicted RBP12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 POLE3Q9NRF9 147 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 RIPOR2Q9Y4F9 1068 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 PNMA8AQ86V59 439 aaPredicted RBP12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 DNAI1Q9UI46 699 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 ZSCAN25Q6NSZ9 544 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 CTNNA3Q9UI47 895 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 TAOK1Q7L7X3 1001 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 ARMC9Q7Z3E5 817 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 HPDP32754 393 aaPredicted RBP12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 FRMD3A2A2Y4 597 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 PPFIA3O75145 1194 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 DDX54Q8TDD1 881 aaKnown RBP12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 PHLDB3Q6NSJ2 640 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 GOLGA8AA7E2F4 631 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 GOLGA8BA8MQT2 603 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 CYLC1P35663 651 aaPredicted RBP12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 CTAGE1Q96RT6 745 aa12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 LARP6Q9BRS8 491 aaKnown RBP12.59□□□□□ -0.39
HDGFL3-201ENST00000299633 CDK19Q9BWU1 502 aa12.58□□□□□ -0.39
HDGFL3-201ENST00000299633 SNCBQ16143 134 aa12.58□□□□□ -0.39
HDGFL3-201ENST00000299633 TMEM87AQ8NBN3 555 aa12.58□□□□□ -0.39
HDGFL3-201ENST00000299633 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.58□□□□□ -0.39
HDGFL3-201ENST00000299633 APOEP02649 317 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 CFAP43Q8NDM7 1665 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 PPP1R7Q15435 360 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 SULT6B1Q6IMI4 303 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 STAC3Q96MF2 364 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 PHACTR2O75167 634 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 STXBP4Q6ZWJ1 553 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 EPRSP07814 1512 aaKnown RBP12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 ZKSCAN5Q9Y2L8 839 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 URB1O60287 2271 aaKnown RBP12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 DRC3Q9H069 523 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 KCNA4P22459 653 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 LMBR1Q8WVP7 490 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 SPINK5Q9NQ38 1064 aaPredicted RBP12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 BIN1O00499 593 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 MAFGO15525 162 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 GIMAP6Q6P9H5 292 aa12.58□□□□□ -0.4
HDGFL3-201ENST00000299633 PPP1R21Q6ZMI0 780 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 HSP90AA5PQ58FG0 334 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 PAWRQ96IZ0 340 aaKnown RBP12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 MYL6BP14649 208 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 PRIM1P49642 420 aaKnown RBP12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 CLUL1Q15846 466 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 ZNF354CQ86Y25 554 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 PYM1Q9BRP8 204 aaKnown RBP12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 PPP1R12AO14974 1030 aaPredicted RBP12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 STAG1Q8WVM7 1258 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 CCDC141Q6ZP82 1450 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 PRG4Q92954 1404 aaPredicted RBP12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 ARHGEF9O43307 516 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 AKR1B10O60218 316 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 RASIP1Q5U651 963 aa12.57□□□□□ -0.4
HDGFL3-201ENST00000299633 PPFIA1Q13136 1202 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 GIPC1O14908 333 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 SMARCA5O60264 1052 aaPredicted RBP12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 USP5P45974 858 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 RRS1Q15050 365 aaKnown RBP12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 FRMD4BQ9Y2L6 1034 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 STK38LQ9Y2H1 464 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 ATF3P18847 181 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 SH2B1Q9NRF2 756 aaPredicted RBP12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 STRN4Q9NRL3 753 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 UBASH3AP57075 661 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 CNNM1Q9NRU3 951 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 TACO1Q9BSH4 297 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms