RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 CEP128Q6ZU80 1094 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 MTRF1LQ9UGC7 380 aaKnown RBP16.81■□□□□ 0.28
SCN3B-201ENST00000299333 PLCB3Q01970 1234 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 SYNCQ9H7C4 482 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 TTC21AQ8NDW8 1320 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 C8orf34Q49A92 452 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 CCDC50Q8IVM0 306 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 DHX58Q96C10 678 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 NDC80O14777 642 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 GBP1P32455 592 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 TNNC1P63316 161 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 CCDC110Q8TBZ0 833 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 SNRKQ9NRH2 765 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 GOLGA6CA6NDK9 693 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 HGSO14964 777 aaPredicted RBP16.8■□□□□ 0.28
SCN3B-201ENST00000299333 GOLGA6DP0CG33 693 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 GOLGA6AQ9NYA3 693 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 ATP6V1AP38606 617 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 PPARDQ03181 441 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 C17orf53Q8N3J3 647 aaPredicted RBP16.8■□□□□ 0.28
SCN3B-201ENST00000299333 EEF2P13639 858 aaKnown RBP16.8■□□□□ 0.28
SCN3B-201ENST00000299333 IFIT5Q13325 482 aaKnown RBP16.8■□□□□ 0.28
SCN3B-201ENST00000299333 PIK3R5Q8WYR1 880 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 SSX2IPQ9Y2D8 614 aa16.8■□□□□ 0.28
SCN3B-201ENST00000299333 MFSD6Q6ZSS7 791 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 PNMA8AQ86V59 439 aaPredicted RBP16.79■□□□□ 0.28
SCN3B-201ENST00000299333 RBSNQ9H1K0 784 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 BAG1Q99933 345 aaPredicted RBP16.79■□□□□ 0.28
SCN3B-201ENST00000299333 NKIRAS1Q9NYS0 192 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 PPP1R7Q15435 360 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 MYRIPQ8NFW9 859 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 PPP1R1BQ9UD71 204 aaPredicted RBP16.79■□□□□ 0.28
SCN3B-201ENST00000299333 ALDH3A1P30838 453 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 CFAP157Q5JU67 520 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 VCX3BQ9H321 246 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 ASIC1P78348 528 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 WHAMMP3Q1A5X7 153 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 CCDC122Q5T0U0 273 aa16.79■□□□□ 0.28
SCN3B-201ENST00000299333 RTEL1-TNFRSF6BF6WH68 1400 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 ABCC11Q96J66 1382 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 KAT14Q9H8E8 782 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 TMOD2Q9NZR1 351 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 CASQ2O14958 399 aaPredicted RBP16.78■□□□□ 0.28
SCN3B-201ENST00000299333 SPTLC2O15270 562 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 SLC5A1P13866 664 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 PEX19P40855 299 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 TSNAXIP1Q2TAA8 658 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 SAMM50Q9Y512 469 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 ZGPATQ8N5A5 531 aaKnown RBP16.78■□□□□ 0.28
SCN3B-201ENST00000299333 BICD1Q96G01 975 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 CARD6Q9BX69 1037 aa16.78■□□□□ 0.28
SCN3B-201ENST00000299333 SLC4A8Q2Y0W8 1093 aa16.77■□□□□ 0.28
SCN3B-201ENST00000299333 RABGAP1Q9Y3P9 1069 aa16.77■□□□□ 0.28
SCN3B-201ENST00000299333 TROQ12816 1431 aaPredicted RBP16.77■□□□□ 0.28
SCN3B-201ENST00000299333 EHMT1Q9H9B1 1298 aa16.77■□□□□ 0.28
SCN3B-201ENST00000299333 MKRN1Q9UHC7 482 aaKnown RBP16.77■□□□□ 0.28
SCN3B-201ENST00000299333 TSPY2A6NKD2 308 aa16.77■□□□□ 0.28
SCN3B-201ENST00000299333 NBPF7P0C2Y1 421 aaPredicted RBP16.77■□□□□ 0.28
SCN3B-201ENST00000299333 ERCC3P19447 782 aa16.77■□□□□ 0.28
SCN3B-201ENST00000299333 OAS2P29728 719 aaKnown RBP16.77■□□□□ 0.28
SCN3B-201ENST00000299333 Q6ZUG5 572 aa16.77■□□□□ 0.28
SCN3B-201ENST00000299333 AQRO60306 1485 aaKnown RBP eCLIP16.77■□□□□ 0.27
SCN3B-201ENST00000299333 WDHD1O75717 1129 aaPredicted RBP16.77■□□□□ 0.27
SCN3B-201ENST00000299333 CALCOCO2Q13137 446 aa16.77■□□□□ 0.27
SCN3B-201ENST00000299333 SMC1BQ8NDV3 1235 aa16.77■□□□□ 0.27
SCN3B-201ENST00000299333 PTPRCP08575 1304 aa16.77■□□□□ 0.27
SCN3B-201ENST00000299333 ESYT1Q9BSJ8 1104 aa16.76■□□□□ 0.27
SCN3B-201ENST00000299333 ZC3H6P61129 1189 aaKnown RBP16.76■□□□□ 0.27
SCN3B-201ENST00000299333 RBBP5Q15291 538 aaKnown RBP16.76■□□□□ 0.27
SCN3B-201ENST00000299333 PPP1R42Q7Z4L9 355 aa16.76■□□□□ 0.27
SCN3B-201ENST00000299333 SMC5Q8IY18 1101 aa16.76■□□□□ 0.27
SCN3B-201ENST00000299333 NEK11Q8NG66 645 aa16.76■□□□□ 0.27
SCN3B-201ENST00000299333 RBM8AQ9Y5S9 174 aaKnown RBP16.76■□□□□ 0.27
SCN3B-201ENST00000299333 ARHGAP25P42331 645 aa16.76■□□□□ 0.27
SCN3B-201ENST00000299333 GKAP1Q5VSY0 366 aaPredicted RBP16.76■□□□□ 0.27
SCN3B-201ENST00000299333 ARHGEF2Q92974 986 aaKnown RBP16.76■□□□□ 0.27
SCN3B-201ENST00000299333 ZBTB43O43298 467 aa16.75■□□□□ 0.27
SCN3B-201ENST00000299333 BMP15O95972 392 aa16.75■□□□□ 0.27
SCN3B-201ENST00000299333 PTCD1O75127 700 aaKnown RBP16.75■□□□□ 0.27
SCN3B-201ENST00000299333 ATP6V0A2Q9Y487 856 aa16.75■□□□□ 0.27
SCN3B-201ENST00000299333 SF3A3Q12874 501 aaKnown RBP eCLIP16.75■□□□□ 0.27
SCN3B-201ENST00000299333 ZBTB17Q13105 803 aa16.75■□□□□ 0.27
SCN3B-201ENST00000299333 VCXQ9H320 206 aa16.75■□□□□ 0.27
SCN3B-201ENST00000299333 AKR1B15C9JRZ8 316 aaPredicted RBP16.75■□□□□ 0.27
SCN3B-201ENST00000299333 CCDC38Q502W7 563 aa16.75■□□□□ 0.27
SCN3B-201ENST00000299333 NAIPQ13075 1403 aa16.75■□□□□ 0.27
SCN3B-201ENST00000299333 ZNF131P52739 623 aa16.74■□□□□ 0.27
SCN3B-201ENST00000299333 HDAC1Q13547 482 aaPredicted RBP16.74■□□□□ 0.27
SCN3B-201ENST00000299333 CABS1Q96KC9 395 aa16.74■□□□□ 0.27
SCN3B-201ENST00000299333 NAPGQ99747 312 aaPredicted RBP16.74■□□□□ 0.27
SCN3B-201ENST00000299333 TSPYL2Q9H2G4 693 aaPredicted RBP16.74■□□□□ 0.27
SCN3B-201ENST00000299333 WTAPQ15007 396 aa16.74■□□□□ 0.27
SCN3B-201ENST00000299333 PCDHB15Q9Y5E8 787 aa16.74■□□□□ 0.27
SCN3B-201ENST00000299333 STARD3NLO95772 234 aa16.74■□□□□ 0.27
SCN3B-201ENST00000299333 ATP2A2P16615 1042 aaKnown RBP16.74■□□□□ 0.27
SCN3B-201ENST00000299333 UAP1Q16222 522 aaPredicted RBP16.74■□□□□ 0.27
SCN3B-201ENST00000299333 CNGA4Q8IV77 575 aa16.74■□□□□ 0.27
SCN3B-201ENST00000299333 TSGA10Q9BZW7 698 aa16.74■□□□□ 0.27
SCN3B-201ENST00000299333 TXNDC16Q9P2K2 825 aa16.74■□□□□ 0.27
SCN3B-201ENST00000299333 GIGYF1O75420 1035 aaPredicted RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms