RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 SYCE3A1L190 88 aa13.84□□□□□ -0.19
SYNGAP1-201ENST00000293748 CCDC152Q4G0S7 254 aa13.84□□□□□ -0.19
SYNGAP1-201ENST00000293748 TBC1D9BQ66K14 1250 aa13.84□□□□□ -0.19
SYNGAP1-201ENST00000293748 FILIP1Q7Z7B0 1213 aa13.84□□□□□ -0.19
SYNGAP1-201ENST00000293748 BRPF1P55201 1214 aaPredicted RBP13.83□□□□□ -0.19
SYNGAP1-201ENST00000293748 BLOC1S2Q6QNY1 142 aa13.83□□□□□ -0.19
SYNGAP1-201ENST00000293748 TRIM34Q9BYJ4 488 aa13.83□□□□□ -0.19
SYNGAP1-201ENST00000293748 ATP2B1P20020 1258 aa13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 DALRD3Q5D0E6 543 aaKnown RBP13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 TMCO3Q6UWJ1 677 aa13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 BRIP1Q9BX63 1249 aa13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 GBP3Q9H0R5 595 aa13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 PHAXQ9H814 394 aaKnown RBP13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 TNS1Q9HBL0 1735 aaKnown RBP13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 SMIM5Q71RC9 77 aa13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 SSH1Q8WYL5 1049 aa13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 CDC5LQ99459 802 aaKnown RBP13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 IQCEQ6IPM2 695 aa13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 UPF3BQ9BZI7 483 aaKnown RBP13.83□□□□□ -0.2
SYNGAP1-201ENST00000293748 SMTNL1A8MU46 457 aa13.82□□□□□ -0.2
SYNGAP1-201ENST00000293748 ITGB4P16144 1822 aa13.82□□□□□ -0.2
SYNGAP1-201ENST00000293748 IGHMBP2P38935 993 aaKnown RBP13.82□□□□□ -0.2
SYNGAP1-201ENST00000293748 FHDC1Q9C0D6 1143 aaPredicted RBP13.82□□□□□ -0.2
SYNGAP1-201ENST00000293748 KCPQ6ZWJ8 1503 aa13.82□□□□□ -0.2
SYNGAP1-201ENST00000293748 RGPD3A6NKT7 1758 aaPredicted RBP13.82□□□□□ -0.2
SYNGAP1-201ENST00000293748 RGPD4Q7Z3J3 1758 aa13.82□□□□□ -0.2
SYNGAP1-201ENST00000293748 PROSER3Q2NL68 480 aa13.82□□□□□ -0.2
SYNGAP1-201ENST00000293748 STIM1Q13586 685 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 KRT32Q14532 448 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 C4BP0C0L5 1744 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 SBF2Q86WG5 1849 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 IRS4O14654 1257 aaPredicted RBP13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 RAD21O60216 631 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 PTPN14Q15678 1187 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 CCDC181Q5TID7 509 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 DNAJC2Q99543 621 aaKnown RBP13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 NPR1P16066 1061 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 TTLL6Q8N841 843 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 SHANK3Q9BYB0 1731 aa13.81□□□□□ -0.2
SYNGAP1-201ENST00000293748 KIF18AQ8NI77 898 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 MASTLQ96GX5 879 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 MPHOSPH8Q99549 860 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 PDRG1Q9NUG6 133 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 CALCOCO1Q9P1Z2 691 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 ZNF521Q96K83 1311 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 CCDC183Q5T5S1 534 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 TRIM22Q8IYM9 498 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 CCDC57Q2TAC2 916 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 CC2D2BQ6DHV5 1058 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 MRPL50Q8N5N7 158 aaKnown RBP13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 TMC4Q7Z404 712 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 ARHGAP45Q92619 1136 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 TOGARAM1Q9Y4F4 1720 aa13.8□□□□□ -0.2
SYNGAP1-201ENST00000293748 RARSP54136 660 aaKnown RBP13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 HLFQ16534 295 aa13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 FAM177A1Q8N128 213 aaPredicted RBP13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 SFPQP23246 707 aaKnown RBP eCLIP13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 ERICH4A6NGS2 130 aa13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 PDE8AO60658 829 aa13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 GRIPAP1Q4V328 841 aa13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 NLRP10Q86W26 655 aa13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 TBC1D2Q9BYX2 928 aa13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 CGNQ9P2M7 1197 aaKnown RBP13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 ZNF219Q9P2Y4 722 aaPredicted RBP13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 CTDP1Q9Y5B0 961 aaPredicted RBP13.79□□□□□ -0.2
SYNGAP1-201ENST00000293748 POLRMTO00411 1230 aaKnown RBP13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 PCCAP05165 728 aaPredicted RBP13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 PRR5LQ6MZQ0 368 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 UBE3BQ7Z3V4 1068 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 NUTM1Q86Y26 1132 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 CCDC102AQ96A19 550 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 STK3Q13188 491 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 ARHGAP27Q6ZUM4 889 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 ZBTB38Q8NAP3 1195 aaPredicted RBP13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 SUPT20HQ8NEM7 779 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 JAKMIP1Q96N16 626 aaKnown RBP13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 SYT17Q9BSW7 474 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 SCAND2PQ9GZW5 306 aaPredicted RBP13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 SPINK5Q9NQ38 1064 aaPredicted RBP13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 F6X3S4 739 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 CCAR1Q8IX12 1150 aaKnown RBP13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 UBE2Q2Q8WVN8 375 aa13.78□□□□□ -0.2
SYNGAP1-201ENST00000293748 C5P01031 1676 aa13.77□□□□□ -0.2
SYNGAP1-201ENST00000293748 ANKRD18BA2A2Z9 1011 aa13.77□□□□□ -0.2
SYNGAP1-201ENST00000293748 ZSCAN12O43309 604 aa13.77□□□□□ -0.2
SYNGAP1-201ENST00000293748 ZFYVE27Q5T4F4 411 aa13.77□□□□□ -0.2
SYNGAP1-201ENST00000293748 CDK5RAP3Q96JB5 506 aa13.77□□□□□ -0.2
SYNGAP1-201ENST00000293748 DYNC1I1O14576 645 aa13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 CDKL5O76039 1030 aa13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 CBX1P83916 185 aa13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 TRIM28Q13263 835 aaKnown RBP13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 SKIDA1Q1XH10 827 aa13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 ZNF34Q8IZ26 560 aa13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 NEMFO60524 1076 aa13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 TM4SF1P30408 202 aa13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 IFIT5Q13325 482 aaKnown RBP13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 ZRSR2Q15696 482 aaKnown RBP13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 ARHGAP29Q52LW3 1261 aa13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 ANKRD18AQ8IVF6 992 aa13.77□□□□□ -0.21
SYNGAP1-201ENST00000293748 FAM89AQ96GI7 184 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms