RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 HCLS1P14317 486 aaPredicted RBP19.06■□□□□ 0.64
CTCF-201ENST00000264010 MCM5P33992 734 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 ME1P48163 572 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 APOBRQ0VD83 1088 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 STK38Q15208 465 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 CAMK4Q16566 473 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 NCOA7Q8NI08 942 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 PIGBQ92521 554 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 ZNF652Q9Y2D9 606 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 SKIDA1Q1XH10 827 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 RFX7Q2KHR2 1363 aa19.05■□□□□ 0.64
CTCF-201ENST00000264010 MAP3K12Q12852 859 aa19.05■□□□□ 0.64
CTCF-201ENST00000264010 GIGYF2Q6Y7W6 1299 aaKnown RBP19.05■□□□□ 0.64
CTCF-201ENST00000264010 NKX1-1Q15270 411 aaPredicted RBP19.05■□□□□ 0.64
CTCF-201ENST00000264010 GNL3LQ9NVN8 582 aaKnown RBP19.05■□□□□ 0.64
CTCF-201ENST00000264010 TPM3P06753 285 aa19.05■□□□□ 0.64
CTCF-201ENST00000264010 TPM4P67936 248 aa19.05■□□□□ 0.64
CTCF-201ENST00000264010 SART3Q15020 963 aaKnown RBP19.05■□□□□ 0.64
CTCF-201ENST00000264010 TICAM2Q86XR7 235 aa19.05■□□□□ 0.64
CTCF-201ENST00000264010 IL17RAQ96F46 866 aa19.05■□□□□ 0.64
CTCF-201ENST00000264010 LLPHQ9BRT6 129 aaKnown RBP19.05■□□□□ 0.64
CTCF-201ENST00000264010 CDCA7Q9BWT1 371 aaPredicted RBP19.05■□□□□ 0.64
CTCF-201ENST00000264010 DNAJC5Q9H3Z4 198 aa19.05■□□□□ 0.64
CTCF-201ENST00000264010 USP25Q9UHP3 1055 aa19.05■□□□□ 0.64
CTCF-201ENST00000264010 SH3TC1Q8TE82 1336 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 CCDC66A2RUB6 948 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 ZMYM1Q5SVZ6 1142 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 GTF3C6Q969F1 213 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 SDF4Q9BRK5 362 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 GOLGA8BA8MQT2 603 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 CDKL5O76039 1030 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 SLC9C2Q5TAH2 1124 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 CDC37L1Q7L3B6 337 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 APPBP2Q92624 585 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 NSFL1CQ9UNZ2 370 aaKnown RBP19.04■□□□□ 0.64
CTCF-201ENST00000264010 MED1Q15648 1581 aaPredicted RBP19.04■□□□□ 0.64
CTCF-201ENST00000264010 NRDCO43847 1150 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 PDE8AO60658 829 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 CYP21A2P08686 494 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 PPP4R3BQ5MIZ7 849 aa19.04■□□□□ 0.64
CTCF-201ENST00000264010 LMO7Q8WWI1 1683 aa19.03■□□□□ 0.64
CTCF-201ENST00000264010 GUCY1B3Q02153 619 aa19.03■□□□□ 0.64
CTCF-201ENST00000264010 ATP6V1AP38606 617 aa19.03■□□□□ 0.64
CTCF-201ENST00000264010 C8orf76Q96K31 380 aa19.03■□□□□ 0.64
CTCF-201ENST00000264010 ISCA1Q9BUE6 129 aa19.03■□□□□ 0.64
CTCF-201ENST00000264010 PTPDC1A2A3K4 754 aa19.02■□□□□ 0.64
CTCF-201ENST00000264010 HSPD1P10809 573 aaKnown RBP19.02■□□□□ 0.64
CTCF-201ENST00000264010 AKAP17AQ02040 695 aaKnown RBP19.02■□□□□ 0.64
CTCF-201ENST00000264010 KCNB2Q92953 911 aa19.02■□□□□ 0.64
CTCF-201ENST00000264010 CHST3Q7LGC8 479 aa19.02■□□□□ 0.64
CTCF-201ENST00000264010 TMEM87AQ8NBN3 555 aa19.02■□□□□ 0.64
CTCF-201ENST00000264010 ZNF526Q8TF50 670 aaPredicted RBP19.02■□□□□ 0.64
CTCF-201ENST00000264010 ACSBG1Q96GR2 724 aa19.02■□□□□ 0.64
CTCF-201ENST00000264010 ZAP70P43403 619 aa19.02■□□□□ 0.63
CTCF-201ENST00000264010 SAFBQ15424 915 aaKnown RBP eCLIP19.02■□□□□ 0.63
CTCF-201ENST00000264010 RRP12Q5JTH9 1297 aaKnown RBP19.02■□□□□ 0.63
CTCF-201ENST00000264010 FAM173BQ6P4H8 233 aa19.02■□□□□ 0.63
CTCF-201ENST00000264010 PDCL2Q8N4E4 241 aa19.02■□□□□ 0.63
CTCF-201ENST00000264010 NAPBQ9H115 298 aa19.02■□□□□ 0.63
CTCF-201ENST00000264010 LRP2BPQ9P2M1 347 aa19.02■□□□□ 0.63
CTCF-201ENST00000264010 KLF18A0A0U1RQI7 1052 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 JAK2O60674 1132 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 CTSWP56202 376 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 CCDC152Q4G0S7 254 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 UTP14AQ9BVJ6 771 aaKnown RBP19.01■□□□□ 0.63
CTCF-201ENST00000264010 E7EWF7 191 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 PRC1O43663 620 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 TRIM28Q13263 835 aaKnown RBP19.01■□□□□ 0.63
CTCF-201ENST00000264010 TSGA10IPQ3SY00 556 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 CKAP2LQ8IYA6 745 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 MED23Q9ULK4 1368 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 TDO2P48775 406 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 ATG9AQ7Z3C6 839 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 CCAR2Q8N163 923 aaKnown RBP19.01■□□□□ 0.63
CTCF-201ENST00000264010 TRIM5Q9C035 493 aa19.01■□□□□ 0.63
CTCF-201ENST00000264010 USP54Q70EL1 1684 aa19■□□□□ 0.63
CTCF-201ENST00000264010 DACT1Q9NYF0 836 aa19■□□□□ 0.63
CTCF-201ENST00000264010 ORC3Q9UBD5 711 aaPredicted RBP19■□□□□ 0.63
CTCF-201ENST00000264010 ADCY5O95622 1261 aa19■□□□□ 0.63
CTCF-201ENST00000264010 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19■□□□□ 0.63
CTCF-201ENST00000264010 ALDH8A1Q9H2A2 487 aaPredicted RBP19■□□□□ 0.63
CTCF-201ENST00000264010 ADORA1P30542 326 aa18.99■□□□□ 0.63
CTCF-201ENST00000264010 HELBQ8NG08 1087 aaPredicted RBP18.99■□□□□ 0.63
CTCF-201ENST00000264010 CCDC69A6NI79 296 aa18.99■□□□□ 0.63
CTCF-201ENST00000264010 PPFIA3O75145 1194 aa18.99■□□□□ 0.63
CTCF-201ENST00000264010 CERS3Q8IU89 383 aa18.99■□□□□ 0.63
CTCF-201ENST00000264010 NAT10Q9H0A0 1025 aaKnown RBP18.99■□□□□ 0.63
CTCF-201ENST00000264010 NLRP10Q86W26 655 aa18.99■□□□□ 0.63
CTCF-201ENST00000264010 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.99■□□□□ 0.63
CTCF-201ENST00000264010 RPAP1Q9BWH6 1393 aaPredicted RBP18.99■□□□□ 0.63
CTCF-201ENST00000264010 GPAA1O43292 621 aa18.98■□□□□ 0.63
CTCF-201ENST00000264010 SMARCC1Q92922 1105 aaPredicted RBP18.98■□□□□ 0.63
CTCF-201ENST00000264010 ZBTB1Q9Y2K1 713 aa18.98■□□□□ 0.63
CTCF-201ENST00000264010 PFKFB2O60825 505 aa18.98■□□□□ 0.63
CTCF-201ENST00000264010 TOB2Q14106 344 aaPredicted RBP18.98■□□□□ 0.63
CTCF-201ENST00000264010 SPC24Q8NBT2 197 aa18.98■□□□□ 0.63
CTCF-201ENST00000264010 CDC5LQ99459 802 aaKnown RBP18.98■□□□□ 0.63
CTCF-201ENST00000264010 MAST3O60307 1309 aa18.98■□□□□ 0.63
CTCF-201ENST00000264010 KDM3BQ7LBC6 1761 aa18.98■□□□□ 0.63
CTCF-201ENST00000264010 CTAGE5O15320 804 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms