RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 THEGQ9P2T0 379 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 UAP1Q16222 522 aaPredicted RBP15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 IFT81Q8WYA0 676 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 PPANQ9NQ55 473 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 GSTO1P78417 241 aa15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 PLCB1Q9NQ66 1216 aa15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 DNAI1Q9UI46 699 aa15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 C6orf50Q9HD87 102 aa15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 RNF216Q9NWF9 866 aaPredicted RBP15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 RAPGEF2Q9Y4G8 1499 aa15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 SPC25Q9HBM1 224 aa15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 TSPY2A6NKD2 308 aa15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 KMT5BQ4FZB7 885 aa15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 GABPAQ06546 454 aa15.68■□□□□ 0.1
CCDC88A-201ENST00000263630 RRAGBQ5VZM2 374 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 CCDC125Q86Z20 511 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 TMTC2Q8N394 836 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 SIRT1Q96EB6 747 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 SULT6B1Q6IMI4 303 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 XAB2Q9HCS7 855 aaKnown RBP15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 RNF8O76064 485 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 ANKRD30BQ9BXX2 1392 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 PALM3A6NDB9 673 aaPredicted RBP15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 NBPF8Q3BBV2 869 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 DPH6Q7L8W6 267 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 SMARCC2Q8TAQ2 1214 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 AFAP1L1Q8TED9 768 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 SDCCAG3Q96C92 435 aa15.67■□□□□ 0.1
CCDC88A-201ENST00000263630 SKILP12757 684 aa15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 HS2ST1Q7LGA3 356 aa15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 CAPZA3Q96KX2 299 aa15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 TXNDC9O14530 226 aa15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 EVI5LQ96CN4 794 aa15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 CCT6AP40227 531 aaKnown RBP15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 IL1RAPL2Q9NP60 686 aa15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 PLEKHH2Q8IVE3 1493 aa15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 STX10O60499 249 aa15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 MYOM3Q5VTT5 1437 aa15.66■□□□□ 0.1
CCDC88A-201ENST00000263630 TLDC2A0PJX2 215 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 PTGS1P23219 599 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 TUBB2AQ13885 445 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 UBL4BQ8N7F7 174 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 NSMCE1Q8WV22 266 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 TUBB2BQ9BVA1 445 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 SYT1P21579 422 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 GJB2P29033 226 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 GNAT3A8MTJ3 354 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 FRMD4BQ9Y2L6 1034 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 GNAQP50148 359 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 CCT2P78371 535 aaKnown RBP15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 CDR2Q01850 454 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 SYF2O95926 243 aaKnown RBP15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 NCOA7Q8NI08 942 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 GOLGA6CA6NDK9 693 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 GOLGA6BA6NDN3 693 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 GOLGA6DP0CG33 693 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 INPP5BP32019 993 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 COG7P83436 770 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 CNGA4Q8IV77 575 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 BOLA2Q9H3K6 86 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 GOLGA6AQ9NYA3 693 aa15.65■□□□□ 0.1
CCDC88A-201ENST00000263630 ABCC8Q09428 1581 aa15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 PPP1R21Q6ZMI0 780 aa15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 TRMT1LQ7Z2T5 733 aaKnown RBP15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 CXorf38Q8TB03 319 aa15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 DHX29Q7Z478 1369 aaKnown RBP15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 PLCB4Q15147 1175 aa15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 KRT23Q9C075 422 aa15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 ZGPATQ8N5A5 531 aaKnown RBP15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 BAG5Q9UL15 447 aa15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 CCDC88BA6NC98 1476 aa15.64■□□□□ 0.09
CCDC88A-201ENST00000263630 RPS6KA2Q15349 733 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 ARID5AQ03989 594 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 RUFY4Q6ZNE9 571 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 NUTM1Q86Y26 1132 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 TERF1P54274 439 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 VWA3BQ502W6 1294 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 VAT1LQ9HCJ6 419 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 DAPK3O43293 454 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 PPP4R1Q8TF05 950 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 FHOD3Q2V2M9 1422 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 SLC26A6Q9BXS9 759 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 RPL13P26373 211 aaKnown RBP15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 TMEM57Q8N5G2 664 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 USP16Q9Y5T5 823 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 ISM2Q6H9L7 571 aa15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 CRNKL1Q9BZJ0 848 aaKnown RBP15.63■□□□□ 0.09
CCDC88A-201ENST00000263630 ZBTB24O43167 697 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 KRBA2Q6ZNG9 492 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 SPECC1L-ADORA2AF8WAN1 911 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 WDR44Q5JSH3 913 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 TSR2Q969E8 191 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 CNNM2Q9H8M5 875 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 SPDYE3A6NKU9 549 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 UBXN1Q04323 297 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 MUM1Q2TAK8 710 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 UBE2Q2Q8WVN8 375 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 PHEXP78562 749 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 PPP2R1AP30153 589 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms