RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 CREB3L3Q68CJ9 461 aa17.87■□□□□ 0.45
CCDC47-201ENST00000225726 PLSCR1O15162 318 aa17.87■□□□□ 0.45
CCDC47-201ENST00000225726 TNRC6CQ9HCJ0 1690 aaKnown RBP17.87■□□□□ 0.45
CCDC47-201ENST00000225726 ZKSCAN1P17029 563 aaPredicted RBP17.86■□□□□ 0.45
CCDC47-201ENST00000225726 PHKA1P46020 1223 aa17.86■□□□□ 0.45
CCDC47-201ENST00000225726 RNF20Q5VTR2 975 aa17.86■□□□□ 0.45
CCDC47-201ENST00000225726 PROM2Q8N271 834 aa17.86■□□□□ 0.45
CCDC47-201ENST00000225726 TM6SF1Q9BZW5 370 aa17.86■□□□□ 0.45
CCDC47-201ENST00000225726 CHGBP05060 677 aa17.86■□□□□ 0.45
CCDC47-201ENST00000225726 TTF1Q15361 905 aaPredicted RBP17.86■□□□□ 0.45
CCDC47-201ENST00000225726 SEC62Q99442 399 aaKnown RBP17.86■□□□□ 0.45
CCDC47-201ENST00000225726 SLC27A2O14975 620 aa17.86■□□□□ 0.45
CCDC47-201ENST00000225726 NFKBIBQ15653 356 aa17.86■□□□□ 0.45
CCDC47-201ENST00000225726 UPF3BQ9BZI7 483 aaKnown RBP17.86■□□□□ 0.45
CCDC47-201ENST00000225726 TAF1P21675 1872 aa17.86■□□□□ 0.45
CCDC47-201ENST00000225726 GYS1P13807 737 aa17.85■□□□□ 0.45
CCDC47-201ENST00000225726 HMG20BQ9P0W2 317 aa17.85■□□□□ 0.45
CCDC47-201ENST00000225726 U3KPZ7 1027 aaPredicted RBP17.85■□□□□ 0.45
CCDC47-201ENST00000225726 CCDC129Q6ZRS4 1044 aa17.85■□□□□ 0.45
CCDC47-201ENST00000225726 NPHP1O15259 732 aa17.84■□□□□ 0.45
CCDC47-201ENST00000225726 PI16Q6UXB8 463 aa17.84■□□□□ 0.45
CCDC47-201ENST00000225726 CNBD1Q8NA66 436 aa17.84■□□□□ 0.45
CCDC47-201ENST00000225726 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.84■□□□□ 0.453e-6■□□□□ 8.5
CCDC47-201ENST00000225726 TNS1Q9HBL0 1735 aaKnown RBP17.84■□□□□ 0.45
CCDC47-201ENST00000225726 ZSCAN25Q6NSZ9 544 aa17.84■□□□□ 0.45
CCDC47-201ENST00000225726 CELF1Q92879 486 aaKnown RBP17.84■□□□□ 0.45
CCDC47-201ENST00000225726 TTC14Q96N46 770 aa17.84■□□□□ 0.45
CCDC47-201ENST00000225726 FOXD4L1Q9NU39 408 aa17.84■□□□□ 0.45
CCDC47-201ENST00000225726 MAST3O60307 1309 aa17.83■□□□□ 0.45
CCDC47-201ENST00000225726 RGPD3A6NKT7 1758 aaPredicted RBP17.83■□□□□ 0.45
CCDC47-201ENST00000225726 RGPD4Q7Z3J3 1758 aa17.83■□□□□ 0.45
CCDC47-201ENST00000225726 APBA3O96018 575 aa17.83■□□□□ 0.45
CCDC47-201ENST00000225726 JAKMIP1Q96N16 626 aaKnown RBP17.83■□□□□ 0.45
CCDC47-201ENST00000225726 DSCC1Q9BVC3 393 aa17.83■□□□□ 0.45
CCDC47-201ENST00000225726 CASTP20810 708 aaKnown RBP17.83■□□□□ 0.44
CCDC47-201ENST00000225726 RPS8P62241 208 aaKnown RBP17.83■□□□□ 0.44
CCDC47-201ENST00000225726 TSGA10IPQ3SY00 556 aa17.83■□□□□ 0.44
CCDC47-201ENST00000225726 TMX3Q96JJ7 454 aa17.83■□□□□ 0.44
CCDC47-201ENST00000225726 ZSWIM6Q9HCJ5 1215 aa17.83■□□□□ 0.44
CCDC47-201ENST00000225726 MINPP1Q9UNW1 487 aa17.83■□□□□ 0.44
CCDC47-201ENST00000225726 RPAP1Q9BWH6 1393 aaPredicted RBP17.83■□□□□ 0.44
CCDC47-201ENST00000225726 CYP2E1P05181 493 aaPredicted RBP17.82■□□□□ 0.44
CCDC47-201ENST00000225726 UBE4AQ14139 1066 aa17.82■□□□□ 0.44
CCDC47-201ENST00000225726 SNAP23O00161 211 aa17.82■□□□□ 0.44
CCDC47-201ENST00000225726 PSMA5P28066 241 aa17.82■□□□□ 0.44
CCDC47-201ENST00000225726 SLFNL1Q499Z3 407 aa17.82■□□□□ 0.44
CCDC47-201ENST00000225726 CCDC24Q8N4L8 307 aa17.82■□□□□ 0.44
CCDC47-201ENST00000225726 DOCK2Q92608 1830 aa17.82■□□□□ 0.44
CCDC47-201ENST00000225726 ADCK5Q3MIX3 580 aa17.82■□□□□ 0.44
CCDC47-201ENST00000225726 APPBP2Q92624 585 aa17.82■□□□□ 0.44
CCDC47-201ENST00000225726 CWC22Q9HCG8 908 aaKnown RBP17.82■□□□□ 0.44
CCDC47-201ENST00000225726 M0R2C6 588 aa17.81■□□□□ 0.44
CCDC47-201ENST00000225726 TM4SF1P30408 202 aa17.81■□□□□ 0.44
CCDC47-201ENST00000225726 SPATA5Q8NB90 893 aa17.81■□□□□ 0.44
CCDC47-201ENST00000225726 PODXL2Q9NZ53 605 aa17.81■□□□□ 0.44
CCDC47-201ENST00000225726 CYP46A1Q9Y6A2 500 aa17.81■□□□□ 0.44
CCDC47-201ENST00000225726 CUL4AQ13619 759 aa17.81■□□□□ 0.44
CCDC47-201ENST00000225726 OSBP2Q969R2 916 aa17.81■□□□□ 0.44
CCDC47-201ENST00000225726 PIH1D3Q9NQM4 214 aaKnown RBP17.81■□□□□ 0.44
CCDC47-201ENST00000225726 PRR5LQ6MZQ0 368 aa17.81■□□□□ 0.44
CCDC47-201ENST00000225726 KRT32Q14532 448 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 VPS53Q5VIR6 699 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 RUFY3Q7L099 469 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 AKT1S1Q96B36 256 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 RASGRF1Q13972 1273 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 WASHC4Q2M389 1173 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 ANKRD2Q9GZV1 360 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 RGS17Q9UGC6 210 aaPredicted RBP17.8■□□□□ 0.44
CCDC47-201ENST00000225726 ADD2P35612 726 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 BCAMP50895 628 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 ST5P78524 1137 aa17.8■□□□□ 0.44
CCDC47-201ENST00000225726 PDRG1Q9NUG6 133 aa17.79■□□□□ 0.44
CCDC47-201ENST00000225726 MYO5AQ9Y4I1 1855 aaKnown RBP17.79■□□□□ 0.44
CCDC47-201ENST00000225726 SERPINB2P05120 415 aa17.79■□□□□ 0.44
CCDC47-201ENST00000225726 AK2P54819 239 aa17.79■□□□□ 0.44
CCDC47-201ENST00000225726 ZNF827Q17R98 1081 aa17.79■□□□□ 0.44
CCDC47-201ENST00000225726 ZNF804BA4D1E1 1349 aa17.79■□□□□ 0.44
CCDC47-201ENST00000225726 FRAT2O75474 233 aaPredicted RBP17.78■□□□□ 0.44
CCDC47-201ENST00000225726 HSPD1P10809 573 aaKnown RBP17.78■□□□□ 0.44
CCDC47-201ENST00000225726 TFCP2L1Q9NZI6 479 aa17.78■□□□□ 0.44
CCDC47-201ENST00000225726 RAB3GAP1Q15042 981 aa17.78■□□□□ 0.44
CCDC47-201ENST00000225726 UBE3CQ15386 1083 aa17.78■□□□□ 0.44
CCDC47-201ENST00000225726 NOL8Q76FK4 1167 aaKnown RBP17.78■□□□□ 0.44
CCDC47-201ENST00000225726 INTS4Q96HW7 963 aaKnown RBP17.78■□□□□ 0.44
CCDC47-201ENST00000225726 GNL3LQ9NVN8 582 aaKnown RBP17.78■□□□□ 0.44
CCDC47-201ENST00000225726 CPA1P15085 419 aa17.77■□□□□ 0.44
CCDC47-201ENST00000225726 GRAPQ13588 217 aa17.77■□□□□ 0.44
CCDC47-201ENST00000225726 SLC9C2Q5TAH2 1124 aa17.77■□□□□ 0.44
CCDC47-201ENST00000225726 GRAPLQ8TC17 118 aaPredicted RBP17.77■□□□□ 0.44
CCDC47-201ENST00000225726 IDH1O75874 414 aaKnown RBP17.77■□□□□ 0.44
CCDC47-201ENST00000225726 POTEAQ6S8J7 498 aa17.77■□□□□ 0.44
CCDC47-201ENST00000225726 LIMCH1Q9UPQ0 1083 aa17.77■□□□□ 0.44
CCDC47-201ENST00000225726 A0A0U1RQG5 324 aaPredicted RBP17.77■□□□□ 0.43
CCDC47-201ENST00000225726 BLOC1S2Q6QNY1 142 aa17.77■□□□□ 0.43
CCDC47-201ENST00000225726 FLAD1Q8NFF5 587 aa17.77■□□□□ 0.43
CCDC47-201ENST00000225726 ALDH8A1Q9H2A2 487 aaPredicted RBP17.77■□□□□ 0.43
CCDC47-201ENST00000225726 EP400Q96L91 3159 aa17.76■□□□□ 0.43
CCDC47-201ENST00000225726 POLRMTO00411 1230 aaKnown RBP17.76■□□□□ 0.43
CCDC47-201ENST00000225726 CAVIN4Q5BKX8 364 aa17.76■□□□□ 0.43
CCDC47-201ENST00000225726 ZGPATQ8N5A5 531 aaKnown RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms