RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Acsbg1Q99PU5 721 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ppp1r10Q80W00 888 aaKnown RBP13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Vps52Q8C754 723 aaKnown RBP13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Slc4a4O88343 1079 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Rtn1Q8K0T0 780 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Filip1Q9CS72 1211 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Mcur1Q9CXD6 340 aa13.44□□□□□ -0.26
Trim56-201ENSMUST00000054384 Trim6Q8BGE7 488 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Pcdhb2Q91Y00 799 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Cep83Q9D5R3 692 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Rsph10bE9PYQ0 876 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Apol10bG3X9K7 334 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 SbdsP70122 250 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ifit1bl2Q3U687 466 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Fam160b2Q80YR2 744 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Zmynd15Q8C0R7 736 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Mrps27Q8BK72 415 aaKnown RBP13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Adcy3Q8VHH7 1145 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Atad3Q925I1 591 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 JmyQ9QXM1 983 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 CadpsQ80TJ1 1355 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Nbr1P97432 988 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Tcp11l1Q8BTG3 509 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Tmem87aQ8BXN9 555 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Chpf2Q3UU43 768 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Bicdl2Q8CHW5 507 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ccdc7Q9D541 371 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Speer2E9Q9U2 264 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ccpg1Q640L3 753 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Homer2Q9QWW1 354 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Mtmr7Q9Z2C9 660 aa13.43□□□□□ -0.26
Trim56-201ENSMUST00000054384 Kif21bQ9QXL1 1668 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Brd1E9PZ26 1189 aaKnown RBP13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Kifap3P70188 793 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Xrcc4Q924T3 326 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Kif17Q99PW8 1038 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Echdc1Q9D9V3 322 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ankrd44B2RXR6 993 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ccdc114Q3UX62 658 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ubac1Q8VDI7 409 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Uba5Q8VE47 403 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Gapvd1Q6PAR5 1458 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Gm1993A6X8I0 212 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 SlxD3Z347 212 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Stim2P83093 746 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Tsr2Q8C8T8 191 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Trim68Q8K243 485 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Armc3A2AU72 881 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Map3k11Q80XI6 850 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Actn2Q9JI91 894 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Terf1P70371 421 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ppp4r3aQ6P2K6 820 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Atp2a1Q8R429 994 aa13.42□□□□□ -0.26
Trim56-201ENSMUST00000054384 Msantd4Q91YU3 345 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Nap1l4Q78ZA7 375 aaKnown RBP13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Cabp5Q9JLK3 173 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Fam170aQ66LM6 333 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Lmod1Q8BVA4 595 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Taf7lQ9D3R9 471 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Ccdc105Q9D4K7 499 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Gm3409A0A0G2JE67 319 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Nedd9O35177 833 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Dcaf17Q3TUL7 519 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Hdac9Q99N13 588 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Lztfl1Q9JHQ5 299 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Rbm8a2A0A0N4SUH6 174 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Rbm8aQ9CWZ3 174 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Gnat2P50149 354 aa13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Plcb3P51432 1234 aaKnown RBP13.41□□□□□ -0.26
Trim56-201ENSMUST00000054384 Kdm1aQ6ZQ88 853 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Csrnp2Q8BGQ2 534 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Skor2A7M7C7 1008 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Aplp1Q03157 653 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Abcc5Q9R1X5 1436 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 MthfsQ9D110 203 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Vgll3P85442 326 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Nlrp2Q4PLS0 1046 aaKnown RBP13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Nkx1-2P42580 305 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 GabpaQ00422 454 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Gm10563F6WIE4 79 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Sclt1G5E861 688 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Atp1a4Q9WV27 1032 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Caskin1Q6P9K8 1431 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Drc1Q3USS3 753 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Znf365Q8BG89 408 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Arhgef6Q8K4I3 771 aa13.4□□□□□ -0.26
Trim56-201ENSMUST00000054384 Gm2030D3Z7C4 212 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Zbtb16Q3UQ17 673 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 KaznQ69ZS8 779 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Micall1Q8BGT6 870 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Zc3h12cQ5DTV4 884 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 EsrrbQ61539 433 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ccdc174Q3U155 467 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Taok1Q5F2E8 1001 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Rab44Q8CB87 725 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Kifc2O08672 792 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Rpl13P47963 211 aaKnown RBP13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Akr1c19G3X9Y6 323 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Gna11P21278 359 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Q4VA45 678 aa13.39□□□□□ -0.27
Retrieved 100 of 22,080 RNA–protein pairs in 25.3 ms