RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 RPUSD3Q6P087 351 aaKnown RBP11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 FDX2Q6P4F2 183 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 MAMDC2Q7Z304 686 aaPredicted RBP11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 UBQLN4Q9NRR5 601 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 C1QL1O75973 258 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 SCGNO76038 276 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 HKR1P10072 659 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 NR2C1P13056 603 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 G0S2P27469 103 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 CFPP27918 469 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 TEX30Q5JUR7 227 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 OPN5Q6U736 354 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 PNLDC1Q8NA58 520 aaKnown RBP11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 TAAR9Q96RI9 348 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 TCEAL2Q9H3H9 227 aaPredicted RBP11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 MRPL22Q9NWU5 206 aaKnown RBP11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 GPR132Q9UNW8 380 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 POLR1DQ9Y2S0 133 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 SEC16AO15027 2179 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 METTL12A8MUP2 240 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 HCKP08631 526 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 CT45A8P0DMV1 189 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 CT45A9P0DMV2 189 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 IGFBP3P17936 291 aaPredicted RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 SERPINA2P20848 420 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF93P35789 620 aaPredicted RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 RGS19P49795 217 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 RPL27P61353 136 aaKnown RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 BTG2P78543 158 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 CT45A2Q5DJT8 189 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 FAM160A2Q8N612 972 aaPredicted RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 UBAC2Q8NBM4 344 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 FAM213BQ8TBF2 198 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 ADOQ96SZ5 270 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 ELL3Q9HB65 397 aaPredicted RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 NOTCH4Q99466 2003 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 CRTAPO75718 401 aaPredicted RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 EN2P19622 333 aaPredicted RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 NKX6-1P78426 367 aaPredicted RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 DMRTC1Q5HYR2 192 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 C1orf100Q5SVJ3 147 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 PTCRAQ6ISU1 281 aaPredicted RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 GLIPR1L1Q6UWM5 242 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 ARRDC1Q8N5I2 433 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF248Q8NDW4 579 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 TMEM230Q96A57 120 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 OR11A1Q9GZK7 315 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF701Q9NV72 531 aaPredicted RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 WIPF3A6NGB9 483 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 TSTD3H0UI37 97 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 PPP1R2P9O14990 202 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 LDLRAD4O15165 306 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 SNCAP37840 140 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF84P51523 738 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 SEC13P55735 322 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 PATE1Q8WXA2 126 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 PTX4Q96A99 478 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 TUBA4BQ9H853 241 aa11.44□□□□□ -0.58
SFSWAP-209ENST00000540469 LOC101059948A0A1B0GTJ6 334 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 NSA2O95478 260 aaKnown RBP11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 RNH1P13489 461 aaKnown RBP11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 CHRFAM7AQ494W8 412 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 ARMC6Q6NXE6 501 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 OR5D14Q8NGL3 314 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 OR14K1Q8NGZ2 314 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 OR1E3Q8WZA6 343 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF700Q9H0M5 742 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 SLC35B3Q9H1N7 401 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 DOK5Q9P104 306 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 ARHGEF17Q96PE2 2063 aaPredicted RBP11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 SOCS1O15524 211 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 BPNT1O95861 308 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 FPR2P25090 351 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 INSM1Q01101 510 aaPredicted RBP11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 POC1AQ8NBT0 407 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 POM121Q96HA1 1249 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 PRRX2Q99811 253 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 TMEM59Q9BXS4 323 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 NELFAQ9H3P2 528 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 C19orf12Q9NSK7 152 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 C1orf123Q9NWV4 160 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 MRPS28Q9Y2Q9 187 aaKnown RBP11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 F5P12259 2224 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 THSD7BQ9C0I4 1608 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 GIMD1P0DJR0 217 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 CDX1P47902 265 aaPredicted RBP11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 RAB1AP62820 205 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 LURAP1Q96LR2 239 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 OR8D2Q9GZM6 311 aa11.43□□□□□ -0.58
SFSWAP-209ENST00000540469 H0Y8X5 98 aa11.42□□□□□ -0.58
SFSWAP-209ENST00000540469 HOXA5P20719 270 aa11.42□□□□□ -0.58
SFSWAP-209ENST00000540469 TAGLN2P37802 199 aaKnown RBP11.42□□□□□ -0.58
SFSWAP-209ENST00000540469 DHPSP49366 369 aaPredicted RBP11.42□□□□□ -0.58
SFSWAP-209ENST00000540469 ROM1Q03395 351 aa11.42□□□□□ -0.58
SFSWAP-209ENST00000540469 PNO1Q9NRX1 252 aaKnown RBP11.42□□□□□ -0.58
SFSWAP-209ENST00000540469 B3GALT5Q9Y2C3 310 aa11.42□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF727A8MUV8 499 aa11.42□□□□□ -0.58
SFSWAP-209ENST00000540469 K7EQS6 105 aa11.42□□□□□ -0.58
SFSWAP-209ENST00000540469 KAT7O95251 611 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms