RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 RRASP10301 218 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 HIST1H1DP16402 221 aaKnown RBP13.07□□□□□ -0.32
NUP54-217ENST00000514987 GNB3P16520 340 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 ZBTB25P24278 435 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 SSPNQ14714 243 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 NHLRC3Q5JS37 347 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 DCAF12L2Q5VW00 463 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 RTL6Q6ICC9 239 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 C6orf15Q6UXA7 325 aaPredicted RBP13.07□□□□□ -0.32
NUP54-217ENST00000514987 COMMD7Q86VX2 200 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 CCDC28AQ8IWP9 274 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 ARRDC1Q8N5I2 433 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 OR4S1Q8NGB4 309 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 OR52H1Q8NGJ2 320 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 NUDCD2Q8WVJ2 157 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 SCGB3A2Q96PL1 93 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 ZNF385AQ96PM9 386 aaKnown RBP13.07□□□□□ -0.32
NUP54-217ENST00000514987 OCSTAMPQ9BR26 566 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 RBM24Q9BX46 236 aaKnown RBP13.07□□□□□ -0.32
NUP54-217ENST00000514987 FXYD6Q9H0Q3 95 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 MED9Q9NWA0 146 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 COMMD9Q9P000 198 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 KCNK7Q9Y2U2 307 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 TRIOBPQ9H2D6 2365 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 EML6Q6ZMW3 1958 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 A0A0D9SG52 128 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 TEX51A0A1B0GUA7 166 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 TNFSF11O14788 317 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 SHOXO15266 292 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 SSX5O60225 188 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 HLA-AP01891 365 aaKnown RBP13.07□□□□□ -0.32
NUP54-217ENST00000514987 OR3A4PP47883 348 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 B3GALT5-AS1P59052 145 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 PPA1Q15181 289 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 NKPD1Q17RQ9 610 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 VAX1Q5SQQ9 334 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 PHYHD1Q5SRE7 291 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 RFPL4BQ6ZWI9 263 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 CD163Q86VB7 1156 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 FAM89BQ8N5H3 189 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 ZIC4Q8N9L1 334 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 OR4K15Q8NH41 348 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 SCARB1Q8WTV0 552 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 MITD1Q8WV92 249 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 CPNE2Q96FN4 548 aaPredicted RBP13.07□□□□□ -0.32
NUP54-217ENST00000514987 UCN2Q96RP3 112 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 PHB2Q99623 299 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 OR10A2Q9H208 303 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 PRDM6Q9NQX0 595 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 TCFL5Q9UL49 500 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 VSIG4Q9Y279 399 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 NOP16Q9Y3C1 178 aaKnown RBP13.07□□□□□ -0.32
NUP54-217ENST00000514987 PCDHGA1Q9Y5H4 931 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 CA11O75493 328 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 CRTAPO75718 401 aaPredicted RBP13.06□□□□□ -0.32
NUP54-217ENST00000514987 PDGFAP04085 211 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 SERPINA7P05543 415 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 SLC25A4P12235 298 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 HRH1P35367 487 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 CD96P40200 585 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 PTGFRP43088 359 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 SLC6A9P48067 706 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 CARD18P57730 90 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 RAB35Q15286 201 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 KISS1Q15726 138 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 LY6G6FQ5SQ64 297 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 DRAM2Q6UX65 266 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 GSG1LQ6UXU4 331 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 DBX2Q6ZNG2 339 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 GPR137CQ8N3F9 429 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 OR14L1PQ8NHC6 308 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 CPT1CQ8TCG5 803 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 MFFQ9GZY8 342 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 ARL6Q9H0F7 186 aa13.06□□□□□ -0.32
NUP54-217ENST00000514987 IGHV3-15A0A0B4J1V0 119 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 C9orf170A2RU37 121 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 OR5H15A6NDH6 313 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 F5H5K5 113 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 G3V3Y1 287 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 LINC01387J3KSC0 135 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 M0R135 149 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 SMAD9O15198 467 aaKnown RBP13.05□□□□□ -0.32
NUP54-217ENST00000514987 CSN2P05814 226 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 CST2P09228 141 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 NAT2P11245 290 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 TCN2P20062 427 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 OTX2P32243 289 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 RPS27AP62979 156 aaKnown RBP13.05□□□□□ -0.32
NUP54-217ENST00000514987 SORDQ00796 357 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 OC90Q02509 493 aaPredicted RBP13.05□□□□□ -0.32
NUP54-217ENST00000514987 GFOD2Q3B7J2 385 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 OR52W1Q6IF63 320 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 SLC16A14Q7RTX9 510 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 SLC51BQ86UW2 128 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 TMEM17Q86X19 198 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 HOGA1Q86XE5 327 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 GVQW1Q8N7I0 195 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 TMEM104Q8NE00 496 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 OR6K3Q8NGY3 331 aa13.05□□□□□ -0.32
NUP54-217ENST00000514987 TERB2Q8NHR7 220 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms