RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 FASP25445 335 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 DDOSTP39656 456 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 GSK3AP49840 483 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 ESRRGP62508 458 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 PAX2Q02962 417 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 ZNF154Q13106 437 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 GFOD2Q3B7J2 385 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 KDM4DQ6B0I6 523 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 LRRN1Q6UXK5 716 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 ZNF826PQ6ZT77 177 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 BCDIN3DQ7Z5W3 292 aaKnown RBP15.36■□□□□ 0.05
CLN3-202ENST00000355477 TEX29Q8N6K0 151 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 PGAM5Q96HS1 289 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 SSBP3Q9BWW4 388 aaPredicted RBP15.36■□□□□ 0.05
CLN3-202ENST00000355477 OR10A2Q9H208 303 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 FN3KRPQ9HA64 309 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 KRT84Q9NSB2 600 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 RNF7Q9UBF6 113 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 LRCH1Q9Y2L9 728 aa15.36■□□□□ 0.05
CLN3-202ENST00000355477 ANKRD30BLA7E2S9 258 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 EFNB1P98172 346 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 SFRP4Q6FHJ7 346 aaPredicted RBP15.35■□□□□ 0.05
CLN3-202ENST00000355477 WDR86Q86TI4 376 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 BOLLQ8N9W6 283 aaKnown RBP15.35■□□□□ 0.05
CLN3-202ENST00000355477 SPERTQ8NA61 448 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 PLPP7Q8NBV4 271 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 SEMA6DQ8NFY4 1073 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 NEIL1Q96FI4 390 aaPredicted RBP15.35■□□□□ 0.05
CLN3-202ENST00000355477 GABARAPL1Q9H0R8 117 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 C1orf123Q9NWV4 160 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 LAMP5Q9UJQ1 280 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 RHBDD3Q9Y3P4 386 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 LRP12Q9Y561 859 aa15.35■□□□□ 0.05
CLN3-202ENST00000355477 A0A0A6YYJ9 748 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 ZAR1LA6NP61 321 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 PRR32B1ATL7 298 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 PSMD9O00233 223 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 MRPL3P09001 348 aaKnown RBP15.34■□□□□ 0.05
CLN3-202ENST00000355477 CPT2P23786 658 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 CD80P33681 288 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 SCGB2A2Q13296 93 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 ZNF841Q6ZN19 808 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 DCDC5Q6ZRR9 648 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 ASRGL1Q7L266 308 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 ZDHHC13Q8IUH4 622 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 C11orf53Q8IXP5 236 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 LYZL4Q96KX0 146 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 YIPF3Q9GZM5 350 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 SEMA6AQ9H2E6 1030 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 OR5V1Q9UGF6 321 aa15.34■□□□□ 0.05
CLN3-202ENST00000355477 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.33■□□□□ 0.04
CLN3-202ENST00000355477 CFL1P23528 166 aaKnown RBP15.33■□□□□ 0.04
CLN3-202ENST00000355477 ACKR3P25106 362 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 PSMB10P40306 273 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 PITPNBP48739 271 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 GNB2P62879 340 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 PAX8Q06710 450 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 OR8B8Q15620 311 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 KLF17Q5JT82 389 aaPredicted RBP15.33■□□□□ 0.04
CLN3-202ENST00000355477 SLX4IPQ5VYV7 408 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 C12orf73Q69YU5 71 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 KRT77Q7Z794 578 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 TCEANCQ8N8B7 351 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 OR8B12Q8NGG6 310 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 OR8B3Q8NGG8 313 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 OR8S1Q8NH09 359 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 C22orf15Q8WYQ4 148 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 DACT3Q96B18 629 aaPredicted RBP15.33■□□□□ 0.04
CLN3-202ENST00000355477 OR8B2Q96RD0 313 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 SLC6A7Q99884 636 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 C14orf119Q9NWQ9 140 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 COPS3Q9UNS2 423 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 AUP1Q9Y679 476 aa15.33■□□□□ 0.04
CLN3-202ENST00000355477 A6NLC8 198 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 C3orf80F5H4A9 247 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 LGALS8O00214 317 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 TNFRSF13BO14836 293 aaPredicted RBP15.32■□□□□ 0.04
CLN3-202ENST00000355477 LHBP01229 141 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 POLR2IP36954 125 aaKnown RBP15.32■□□□□ 0.04
CLN3-202ENST00000355477 PSMA6P60900 246 aaKnown RBP15.32■□□□□ 0.04
CLN3-202ENST00000355477 AADACL4Q5VUY2 407 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 WDR25Q64LD2 544 aaPredicted RBP15.32■□□□□ 0.04
CLN3-202ENST00000355477 MEPCEQ7L2J0 689 aaKnown RBP15.32■□□□□ 0.04
CLN3-202ENST00000355477 GCSAMQ8N6F7 178 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 ZNF418Q8TF45 676 aaPredicted RBP15.32■□□□□ 0.04
CLN3-202ENST00000355477 CIB1Q99828 191 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 TTTY10Q9BZA0 68 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 RGCCQ9H4X1 137 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 NIPAL2Q9H841 368 aa15.32■□□□□ 0.04
CLN3-202ENST00000355477 CIB2O75838 187 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 FCGR1AP12314 374 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 EGR1P18146 543 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 HILS1P60008 231 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 MZT1Q08AG7 82 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 POU4F2Q12837 409 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 LCN1P1Q5VSP4 162 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 DEGS2Q6QHC5 323 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 USP43Q70EL4 1123 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 NLRC3Q7RTR2 1065 aa15.31■□□□□ 0.04
CLN3-202ENST00000355477 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms