RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 MYO1DO94832 1006 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 GABARAPO95166 117 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 LCA5LO95447 670 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 HLA-HP01893 362 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 FGGP02679 453 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 RPN2P04844 631 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 FABP3P05413 133 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 SERPINE2P07093 398 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 KRT7P08729 469 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 KRT16P08779 473 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 DCKP27707 260 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 IL12BP29460 328 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 LCN1P31025 176 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 SERPINB5P36952 375 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 VHLP40337 213 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 GPR1P46091 355 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 KCNJ3P48549 501 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 TMED10P49755 219 aaKnown RBP1.58□□□□□ -2.16
CD44-239ENST00000639002 VSX2P58304 361 aaPredicted RBP1.58□□□□□ -2.16
CD44-239ENST00000639002 BASP1P80723 227 aaKnown RBP1.58□□□□□ -2.16
CD44-239ENST00000639002 IRF8Q02556 426 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 IFFO1Q0D2I5 559 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 ERCC8Q13216 396 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 STX3Q13277 289 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 ITIH4Q14624 930 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 ZNF77Q15935 545 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 UAP1Q16222 522 aaPredicted RBP1.58□□□□□ -2.16
CD44-239ENST00000639002 TAF9Q16594 264 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 HSDL1Q3SXM5 330 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 PPM1LQ5SGD2 360 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 HES5Q5TA89 166 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 SPESP1Q6UW49 350 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 CERS6Q6ZMG9 384 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 PLEKHG7Q6ZR37 379 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 ZNF493Q6ZR52 646 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 PID1Q7Z2X4 250 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 HDDC2Q7Z4H3 204 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 MTERF4Q7Z6M4 381 aaKnown RBP1.58□□□□□ -2.16
CD44-239ENST00000639002 CMC1Q7Z7K0 106 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 LHFPL3Q86UP9 236 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 APRG1Q8IVJ8 170 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 NKAIN4Q8IVV8 208 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 IQCKQ8N0W5 287 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 C8orf31Q8N9H6 132 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 NECAP1Q8NC96 275 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 OR7G1Q8NGA0 311 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 FAM110BQ8TC76 370 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 CDKL2Q92772 493 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 TNFRSF14Q92956 283 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 MRGPRFQ96AM1 343 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 FAM3DQ96BQ1 224 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 ECHDC3Q96DC8 303 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 PIK3IP1Q96FE7 263 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 CHMP6Q96FZ7 201 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 RNF170Q96K19 258 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 C12orf42Q96LP6 360 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 ATP5SQ99766 215 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 FAIM2Q9BWQ8 316 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 ZYG11BQ9C0D3 744 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 RPF2Q9H7B2 306 aaKnown RBP1.58□□□□□ -2.16
CD44-239ENST00000639002 UGT1A10Q9HAW8 530 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 SLC38A10Q9HBR0 1119 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 ADA2Q9NZK5 511 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 ZNRD1Q9P1U0 126 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 SLC22A14Q9Y267 594 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 RBMX2Q9Y388 322 aaKnown RBP1.58□□□□□ -2.16
CD44-239ENST00000639002 GOLT1BQ9Y3E0 138 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 UBIAD1Q9Y5Z9 338 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 FBN3Q75N90 2809 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 CDHR2Q9BYE9 1310 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 NAV2Q8IVL1 2488 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 TRBV9A0A0B4J1U6 114 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 A0A1B0GVI7 797 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 A0A1B0GW15 77 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 MGAT4DA6NG13 374 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 VGLL3A8MV65 326 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CDC7O00311 574 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 RFXANKO14593 260 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 TOR1AO14656 332 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 XRCC2O43543 280 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 SULT1B1O43704 296 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CCNKO75909 580 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 AHSA1O95433 338 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CLIC3O95833 236 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 FADS2O95864 444 aaKnown RBP1.57□□□□□ -2.16
CD44-239ENST00000639002 IFNW1P05000 195 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 P0C880 135 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 NQO2P16083 231 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 BGNP21810 368 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 GABRR2P28476 465 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 NSG1P42857 185 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CCNHP51946 323 aaPredicted RBP1.57□□□□□ -2.16
CD44-239ENST00000639002 NUTF2P61970 127 aaKnown RBP1.57□□□□□ -2.16
CD44-239ENST00000639002 VSNL1P62760 191 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 RAP1AP62834 184 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CTAG1AP78358 180 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 ARG2P78540 354 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 ADARB1P78563 741 aaKnown RBP1.57□□□□□ -2.16
CD44-239ENST00000639002 ZNF92Q03936 586 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 ZNF816Q0VGE8 651 aaPredicted RBP1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms