RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TMEM86BQ8N661 226 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 GCSAMQ8N6F7 178 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 FAM216BQ8N7L0 139 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 ZSCAN4Q8NAM6 433 aaPredicted RBP7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 SDR9C7Q8NEX9 313 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 SLC26A10Q8NG04 563 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 OR51L1Q8NGJ5 315 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 TBC1D15Q8TC07 691 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 C17orf50Q8WW18 174 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 CCL13Q99616 98 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 WACQ9BTA9 647 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 TRIM15Q9C019 465 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 NSRP1Q9H0G5 558 aaKnown RBP7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 FN3KRPQ9HA64 309 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 MRPL22Q9NWU5 206 aaKnown RBP7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 FOXJ3Q9UPW0 622 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 POMT1Q9Y6A1 747 aa7.11□□□□□ -1.27
SHKBP1-220ENST00000599716 OR6C68A6NDL8 312 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 GGT3PA6NGU5 568 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 UNC119BA6NIH7 251 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 RNASEK-C17orf49H0YIS7 233 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 M0R135 149 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 GSTA4O15217 222 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 H1F0P07305 194 aaKnown RBP7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 GGT2P36268 569 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 GSK3BP49841 420 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 PRKXP51817 358 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 SLC7A2P52569 658 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 CSNK2BP67870 215 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 MALLQ13021 153 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 IKZF1Q13422 519 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 LY6EQ16553 131 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 BEAN1Q3B7T3 259 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 ANKDD1AQ495B1 522 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 METTL21CQ5VZV1 264 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 CD276Q5ZPR3 534 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 GPR139Q6DWJ6 353 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 SLC35E4Q6ICL7 350 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 SMARCD3Q6STE5 483 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 CBLL1Q75N03 491 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 ADCK1Q86TW2 530 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 LDLRAD3Q86YD5 345 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 LINC00471Q8N535 108 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 PNLDC1Q8NA58 520 aaKnown RBP7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 CYB561A3Q8NBI2 242 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 FAM156AQ8NDB6 213 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 OR5T2Q8NGG2 359 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 OR56B2PQ8NGI1 322 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 STON2Q8WXE9 905 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 ZNF799Q96GE5 643 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 GPX7Q96SL4 187 aaPredicted RBP7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 ATF6BQ99941 703 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 PPA2Q9H2U2 334 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 FGFR1OP2Q9NVK5 253 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 KIF17Q9P2E2 1029 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 ATPIF1Q9UII2 106 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 AURKCQ9UQB9 309 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 ENPP4Q9Y6X5 453 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 LYSTQ99698 3801 aa7.1□□□□□ -1.27
SHKBP1-220ENST00000599716 HTR3EA5X5Y0 456 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 BBIP1A8MTZ0 92 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 J3QW42 95 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 ACOT8O14734 319 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 AHCYL1O43865 530 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 FSTL3O95633 263 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 TXNDC12O95881 172 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 CSF1P09603 554 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 TROVE2P10155 538 aaKnown RBP eCLIP7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 AMY2BP19961 511 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 CRABP1P29762 137 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 NPY4RP50391 375 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 RPS6KA3P51812 740 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 COL10A1Q03692 680 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 FAM189A2Q15884 450 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 PCK2Q16822 640 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 RFX4Q33E94 735 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 COQ5Q5HYK3 327 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 WDR38Q5JTN6 314 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 DHRS7BQ6IAN0 325 aaPredicted RBP7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 DPY19L2P2Q6ZN68 376 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 C1orf122Q6ZSJ8 110 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 REC114Q7Z4M0 266 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 C11orf53Q8IXP5 236 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 Q8N7P7 452 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 CELF2-AS1Q8N7Q2 184 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 OR2AJ1Q8NGZ0 328 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 PPP1R35Q8TAP8 253 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 FANK1Q8TC84 345 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 LRRC29Q8WV35 223 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 RORBQ92753 470 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 FAM162AQ96A26 154 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 IFT27Q9BW83 186 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 OR52D1Q9H346 318 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 CNTD2Q9H8S5 307 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 SNTG1Q9NSN8 517 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 GID8Q9NWU2 228 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 NDUFAF4Q9P032 175 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 ZNRD1Q9P1U0 126 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 CYB5R1Q9UHQ9 305 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms