RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 OR3A4PP47883 348 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 RGS4P49798 205 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 CDK9P50750 372 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 RAP1GDS1P52306 607 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 SUCLG1P53597 346 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 MTTPP55157 894 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 STXBP1P61764 594 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 TNFRSF17Q02223 184 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 DMTNQ08495 405 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 PLCXD2Q0VAA5 305 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 CHIT1Q13231 466 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 SLAMF1Q13291 335 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 HERPUD1Q15011 391 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 TPSAB1Q15661 275 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 PRR4Q16378 134 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 CARTPTQ16568 116 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 HFEQ30201 348 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 NDUFAF6Q330K2 333 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF791Q3KP31 576 aaPredicted RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 PIGGQ5H8A4 983 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 RAET1LQ5VY80 246 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF57Q68EA5 555 aaPredicted RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 DUPD1Q68J44 220 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 TRIM40Q6P9F5 258 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 SCIMPQ6UWF3 145 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 TMIGD1Q6UXZ0 262 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 DPY19L2P2Q6ZN68 376 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 OLIG3Q7RTU3 272 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 TSEN54Q7Z6J9 526 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 HIST2H2ABQ8IUE6 130 aaPredicted RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 LRRC25Q8N386 305 aaPredicted RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 ACOT4Q8N9L9 421 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF540Q8NDQ6 660 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 ATP6V1C2Q8NEY4 427 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 OR52R1Q8NGF1 315 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 FNDC9Q8TBE3 224 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 SLC22A8Q8TCC7 542 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 ADAMTS16Q8TE57 1224 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 PAQR8Q8TEZ7 354 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 KCTD4Q8WVF5 259 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 HIST1H2ACQ93077 130 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 TMBIM1Q969X1 311 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 MAGOHBQ96A72 148 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 TMEM45BQ96B21 275 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 CERS2Q96G23 380 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 SMIM10Q96HG1 83 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 PPP1R2P1Q96PQ5 205 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 OSBPL11Q9BXB4 747 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 C1QTNF6Q9BXI9 259 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 EBPLQ9BY08 206 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 MS4A8Q9BY19 250 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 DPH5Q9H2P9 285 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 TAS2R13Q9NYV9 303 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 CD274Q9NZQ7 290 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 COPS7AQ9UBW8 275 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 BCAP29Q9UHQ4 241 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 DKKL1Q9UK85 242 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF490Q9ULM2 529 aaPredicted RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 BOKQ9UMX3 212 aaPredicted RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 EIF3LQ9Y262 564 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 PLLPQ9Y342 182 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 MMACHCQ9Y4U1 282 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 SEC16AO15027 2179 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 INTS1Q8N201 2190 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 TRRAPQ9Y4A5 3859 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 FLNAP21333 2647 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 KMT2CQ8NEZ4 4911 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 JMJD1CQ15652 2540 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 NCKAP5O14513 1909 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 IGKV2D-24A0A075B6R9 120 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 IQANK1A0A1B0GTG1 560 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SLC22A20A6NK97 555 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 BTNL10A8MVZ5 291 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 PLPP1O14494 284 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 CASKO14936 926 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 ARPC1BO15143 372 aaKnown RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 PFDN6O15212 129 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 HCN1O60741 890 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 RAMP1O60894 148 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 CTNSO60931 367 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 ICOSLGO75144 302 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SYNGR4O95473 234 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 EPPINO95925 133 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 HPNP05981 417 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 KLK1P06870 262 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SERPINA6P08185 405 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 GABRA1P14867 456 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 AREGP15514 252 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF44P15621 663 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 HIST1H1TP22492 207 aaPredicted RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 UGT2B10P36537 528 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 CASP3P42574 277 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 MAGEA3P43357 314 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 LHX2P50458 406 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 CLDN18P56856 261 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 HSD17B7P56937 341 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 GPX6P59796 221 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 IRF8Q02556 426 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 C2orf54Q08AI8 447 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 RCAN2Q14206 197 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms