RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 RGCCQ9H4X1 137 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 G6PC2Q9NQR9 355 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 PMF1-BGLAPU3KQ54 211 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 ARFGEF3Q5TH69 2177 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 SPG11Q96JI7 2443 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 IGLV3-9A0A075B6K5 115 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 A0A0U1RQV5 110 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 PNMA8CA0A1B0GUJ8 204 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 A0A1B0GVI7 797 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 E9PI62 339 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 P2RY10O00398 339 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 CD8AP01732 235 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 IGHV3-13P01766 116 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 DNASE1P24855 282 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 KIR3DL2P43630 455 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 MAP2K4P45985 399 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 GTF2A1P52655 376 aaPredicted RBP12.81□□□□□ -0.36
NUP54-213ENST00000513352 CHN2P52757 468 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 CDH15P55291 814 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 WNT4P56705 351 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 PRSS48Q7RTY5 328 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 ELMOD2Q8IZ81 293 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 PRSS35Q8N3Z0 413 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 ZNF676Q8N7Q3 588 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 NANOGP1Q8N7R0 232 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 OR56B2PQ8NGI1 322 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 HAVCR2Q8TDQ0 301 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 LYZL4Q96KX0 146 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 VRK1Q99986 396 aaPredicted RBP12.81□□□□□ -0.36
NUP54-213ENST00000513352 CDCA4Q9BXL8 241 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 CXorf56Q9H5V9 222 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 TRIM36Q9NQ86 728 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 GPR84Q9NQS5 396 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 BABAM2Q9NXR7 383 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 ST6GALNAC2Q9UJ37 374 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 UNC79Q9P2D8 2635 aa12.81□□□□□ -0.36
NUP54-213ENST00000513352 FBN2P35556 2912 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 TRBV2A0A0J9YWF9 115 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 hCG_38984A0A1B0GV85 526 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 CD300LBA8K4G0 201 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 NAT2P11245 290 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 KITLGP21583 273 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 CDKN1AP38936 164 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 EVX1P49640 407 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 GSK3AP49840 483 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 NANOS3P60323 173 aaKnown RBP12.8□□□□□ -0.36
NUP54-213ENST00000513352 MED22Q15528 200 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 SWI5Q1ZZU3 235 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 MST1LQ2TV78 715 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 TMEM255AQ5JRV8 349 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 C11orf71Q6IPW1 123 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 SVOPQ8N4V2 548 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 ZFP41Q8N8Y5 198 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 GTF3AQ92664 365 aaKnown RBP12.8□□□□□ -0.36
NUP54-213ENST00000513352 SPSB4Q96A44 273 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 REPIN1Q9BWE0 567 aaKnown RBP12.8□□□□□ -0.36
NUP54-213ENST00000513352 COMMD4Q9H0A8 199 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 TPK1Q9H3S4 243 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 FRRS1LQ9P0K9 344 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 ZNF391Q9UJN7 358 aa12.8□□□□□ -0.36
NUP54-213ENST00000513352 ASH1LQ9NR48 2969 aaKnown RBP12.79□□□□□ -0.36
NUP54-213ENST00000513352 USF3Q68DE3 2245 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 LOC107986453A0A1B0GWG9 222 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 IQCF6A8MYZ5 107 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 TPD52L2O43399 206 aaKnown RBP12.79□□□□□ -0.36
NUP54-213ENST00000513352 SYT7O43581 403 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 SPRY3O43610 288 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 TNFAIP8O95379 198 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 ERCC1P07992 297 aaPredicted RBP12.79□□□□□ -0.36
NUP54-213ENST00000513352 UBCP0CG48 685 aaKnown RBP12.79□□□□□ -0.36
NUP54-213ENST00000513352 HSMCR30P0CW71 290 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 CD53P19397 219 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 TGM4P49221 684 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 ZNF81P51508 661 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 TAS2R43P59537 309 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 FAM3AP98173 230 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 SLC3A1Q07837 685 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 IRF3Q14653 427 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 KCTD21Q4G0X4 260 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 ZMAT1Q5H9K5 638 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 RNLSQ5VYX0 342 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 XAF1Q6GPH4 301 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 FDX2Q6P4F2 183 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 CDH24Q86UP0 819 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 EGFL6Q8IUX8 553 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 OR5AK2Q8NH90 309 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 PIGTQ969N2 578 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 RNF166Q96A37 237 aaPredicted RBP12.79□□□□□ -0.36
NUP54-213ENST00000513352 SOX7Q9BT81 388 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 MSL2Q9HCI7 577 aa12.79□□□□□ -0.36
NUP54-213ENST00000513352 FBXO9Q9UK97 447 aaPredicted RBP12.79□□□□□ -0.36
NUP54-213ENST00000513352 FLNBO75369 2602 aaKnown RBP12.79□□□□□ -0.36
NUP54-213ENST00000513352 TMEM212A6NML5 194 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 ANKRD30BLA7E2S9 258 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 MTRF1O75570 445 aaKnown RBP12.78□□□□□ -0.36
NUP54-213ENST00000513352 LALBAP00709 142 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 MAP2K3P46734 347 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 PPOXP50336 477 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 CCR9P51686 369 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 CDK5R1Q15078 307 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms