RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 IGFBPL1Q8WX77 278 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 HAVCR1Q96D42 359 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 RGCCQ9H4X1 137 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 TAAR3PQ9P1P4 343 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 ST6GALNAC2Q9UJ37 374 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 PURGQ9UJV8 347 aaKnown RBP25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 ERGIC3Q9Y282 383 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 A0A0U1RQV5 110 aa25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 E9PI62 339 aa25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 KITLGP21583 273 aa25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 ALDH3B1P43353 468 aa25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 GBX2P52951 348 aaPredicted RBP25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 NANOS3P60323 173 aaKnown RBP25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 OR2T2Q6IF00 324 aa25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 PRSS48Q7RTY5 328 aa25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 ELMOD2Q8IZ81 293 aa25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 GATAD2BQ8WXI9 593 aa25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 REPIN1Q9BWE0 567 aaKnown RBP25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 USF3Q68DE3 2245 aa25.34■■□□□ 1.65
LIMCH1-211ENST00000509638 M0R233 179 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 CD53P19397 219 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 KIR3DL2P43630 455 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 MRPL28Q13084 256 aaKnown RBP25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 ODF4Q2M2E3 257 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 RNLSQ5VYX0 342 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 FDX2Q6P4F2 183 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 KLBQ86Z14 1044 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 ZNF485Q8NCK3 441 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 BHLHE23Q8NDY6 225 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 OR51E1Q8TCB6 317 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 LYZL4Q96KX0 146 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 MND1Q9BWT6 205 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 YTHDF1Q9BYJ9 559 aaKnown RBP25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 DYNLRB1Q9NP97 96 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 ZNF391Q9UJN7 358 aa25.33■■□□□ 1.65
LIMCH1-211ENST00000509638 hCG_38984A0A1B0GV85 526 aa25.32■■□□□ 1.64
LIMCH1-211ENST00000509638 CFL1P23528 166 aaKnown RBP25.32■■□□□ 1.64
LIMCH1-211ENST00000509638 WNT4P56705 351 aa25.32■■□□□ 1.64
LIMCH1-211ENST00000509638 OR5AS1Q8N127 324 aa25.32■■□□□ 1.64
LIMCH1-211ENST00000509638 HAVCR2Q8TDQ0 301 aa25.32■■□□□ 1.64
LIMCH1-211ENST00000509638 CACNG6Q9BXT2 260 aa25.32■■□□□ 1.64
LIMCH1-211ENST00000509638 GPR84Q9NQS5 396 aa25.32■■□□□ 1.64
LIMCH1-211ENST00000509638 FRRS1LQ9P0K9 344 aa25.32■■□□□ 1.64
LIMCH1-211ENST00000509638 GTF2A1P52655 376 aaPredicted RBP25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 FAM3AP98173 230 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 IRF3Q14653 427 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 XAF1Q6GPH4 301 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 NANOGP1Q8N7R0 232 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 GGT3PA6NGU5 568 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 SELEP16581 610 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 CDKN1AP38936 164 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 OR56B2PQ8NGI1 322 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 GTF3AQ92664 365 aaKnown RBP25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 SOX7Q9BT81 388 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 TRIM36Q9NQ86 728 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 BABAM2Q9NXR7 383 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 GPR160Q9UJ42 338 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 EDARQ9UNE0 448 aa25.31■■□□□ 1.64
LIMCH1-211ENST00000509638 PLSCR5A0PG75 271 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 IQCF6A8MYZ5 107 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 P2RY10O00398 339 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 LALBAP00709 142 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 IGLV3-1P01715 115 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 BMP4P12644 408 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 TGM4P49221 684 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 MMP15P51511 669 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 ALKBH1Q13686 389 aaKnown RBP25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 PIGTQ969N2 578 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 FAM71F1Q96KD3 344 aaPredicted RBP25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 CXorf56Q9H5V9 222 aa25.3■■□□□ 1.64
LIMCH1-211ENST00000509638 CD300LBA8K4G0 201 aa25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 LILRA1O75019 489 aa25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 UBCP0CG48 685 aaKnown RBP25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 NAT2P11245 290 aa25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 GSK3AP49840 483 aa25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 PPOXP50336 477 aa25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 DOC2BQ14184 412 aa25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 MOGQ16653 247 aa25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 CDH24Q86UP0 819 aa25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 CGGBP1Q9UFW8 167 aaPredicted RBP25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 PMF1-BGLAPU3KQ54 211 aa25.29■■□□□ 1.64
LIMCH1-211ENST00000509638 OVOL3O00110 214 aa25.28■■□□□ 1.64
LIMCH1-211ENST00000509638 CCR9P51686 369 aa25.28■■□□□ 1.64
LIMCH1-211ENST00000509638 CHN2P52757 468 aa25.28■■□□□ 1.64
LIMCH1-211ENST00000509638 CDH15P55291 814 aa25.28■■□□□ 1.64
LIMCH1-211ENST00000509638 OR8B8Q15620 311 aa25.28■■□□□ 1.64
LIMCH1-211ENST00000509638 KCTD21Q4G0X4 260 aa25.28■■□□□ 1.64
LIMCH1-211ENST00000509638 MSL2Q9HCI7 577 aa25.28■■□□□ 1.64
LIMCH1-211ENST00000509638 FBXO9Q9UK97 447 aaPredicted RBP25.28■■□□□ 1.64
LIMCH1-211ENST00000509638 LSM2Q9Y333 95 aaKnown RBP25.28■■□□□ 1.64
LIMCH1-211ENST00000509638 LOC107986453A0A1B0GWG9 222 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 ZSCAN5BA6NJL1 495 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 OR4C45A6NMZ5 311 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 DNASE1P24855 282 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 TNK1Q13470 666 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 CDK5R1Q15078 307 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 CCDC58Q4VC31 144 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 ZCCHC24Q8N2G6 241 aaKnown RBP25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 OR5M11Q96RB7 305 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 ARID1AO14497 2285 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms