RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 AUP1Q9Y679 476 aa12.2□□□□□ -0.46
NIF3L1-205ENST00000409588 FBN3Q75N90 2809 aa12.2□□□□□ -0.46
NIF3L1-205ENST00000409588 CEACAM18A8MTB9 384 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 PRR23D1E9PI22 279 aaPredicted RBP12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 PRODHO43272 600 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 E2F6O75461 281 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 SOX14O95416 240 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 FSHBP01225 129 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 PRR23D2P0DMB1 279 aaPredicted RBP12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 OSMP13725 252 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 HSD11B1P28845 292 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 RASSF2P50749 326 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 ZNF92Q03936 586 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 PAX8Q06710 450 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 FLOT2Q14254 428 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 ZNF404Q494X3 552 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 LINC01590Q5TEZ4 76 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 BTNL3Q6UXE8 466 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 RBMS3Q6XE24 437 aaKnown RBP12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 DCDC5Q6ZRR9 648 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 FTMTQ8N4E7 242 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 BPIFB2Q8N4F0 458 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 PAPD5Q8NDF8 572 aaKnown RBP12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 ZNF420Q8TAQ5 688 aaPredicted RBP12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 RNF133Q8WVZ7 376 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 NEIL1Q96FI4 390 aaPredicted RBP12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 CLPTM1LQ96KA5 538 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 SSBP3Q9BWW4 388 aaPredicted RBP12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 DCAF16Q9NXF7 216 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 VNN3Q9NY84 501 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 PDP1Q9P0J1 537 aaPredicted RBP12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 RNF7Q9UBF6 113 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 ZNF391Q9UJN7 358 aa12.19□□□□□ -0.46
NIF3L1-205ENST00000409588 TRAPPC2LH3BP13 241 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 DNAJC8O75937 253 aaPredicted RBP12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 HLA-DPB1P04440 258 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 GYPBP06028 91 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 RPS2P15880 293 aaKnown RBP12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 CA6P23280 308 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 RPS27P42677 84 aaKnown RBP12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 BPIFB3P59826 476 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 GNB2P62879 340 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 CDK5Q00535 292 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 EIF2B1Q14232 305 aaKnown RBP12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 GINS1Q14691 196 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 SNAI3Q3KNW1 292 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 SLC35D3Q5M8T2 416 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 CD276Q5ZPR3 534 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 DPY19L4Q7Z388 723 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 DEFB108BQ8NET1 73 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 SEMA6DQ8NFY4 1073 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 OR8B3Q8NGG8 313 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 RAB40AQ8WXH6 277 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 OR8B2Q96RD0 313 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 TMEM246Q9BRR3 403 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 MMADHCQ9H3L0 296 aaPredicted RBP12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 NIPAL2Q9H841 368 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 NUP50Q9UKX7 468 aa12.18□□□□□ -0.46
NIF3L1-205ENST00000409588 KIR2DS1A0A191URI9 304 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 TCRBV3S1A0A5B6 114 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 ANKRD30BLA7E2S9 258 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 PHYHO14832 338 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 TIPRLO75663 272 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 ATP5HO75947 161 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 VENTXO95231 258 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 CYB5R3P00387 301 aaPredicted RBP12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 LIPFP07098 398 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 PMELP40967 661 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 PRKXP51817 358 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 GUCA2AQ02747 115 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 ARMCX4Q5H9R4 360 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 GLYATL3Q5SZD4 288 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 SPATA24Q86W54 205 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 CSNK2A3Q8NEV1 391 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 ABHD6Q9BV23 337 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 OR10A2Q9H208 303 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 ZMAT3Q9HA38 289 aaKnown RBP12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 ABCB9Q9NP78 766 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 MMP26Q9NRE1 261 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 POMPQ9Y244 141 aa12.17□□□□□ -0.46
NIF3L1-205ENST00000409588 WNK2Q9Y3S1 2297 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 TRAV38-1A0A0B4J264 116 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 ACOD1A6NK06 481 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 LYNP07948 512 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 CLUP10909 449 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 POU1F1P28069 291 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 PSMB10P40306 273 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 CX3CR1P49238 355 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 COMPP49747 757 aaPredicted RBP12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 CBX1P83916 185 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 DBPQ10586 325 aaPredicted RBP12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 TIGD6Q17RP2 521 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 TUSC1Q2TAM9 212 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 ERI1Q8IV48 349 aaKnown RBP12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 TIGD4Q8IY51 512 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 OR6N2Q8NGY6 317 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 OTOSQ8NHW6 89 aa12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 DVL3Q92997 716 aaPredicted RBP12.16□□□□□ -0.46
NIF3L1-205ENST00000409588 OTULINQ96BN8 352 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms