RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 WNT2BQ93097 391 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 CHST11Q9NPF2 352 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 ZNF208O43345 1280 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 ACTL6AO96019 429 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 BCKDHBP21953 392 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 CLDN6P56747 220 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 QRFPP83859 136 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 PHF19Q5T6S3 580 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 TMEM71Q6P5X7 295 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 MARCH1Q8TCQ1 289 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 ROBO4Q8WZ75 1007 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 FOXRED1Q96CU9 486 aaPredicted RBP18.3■□□□□ 0.52
CLK3-202ENST00000395066 PIK3IP1Q96FE7 263 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 C12orf57Q99622 126 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 CHRNA10Q9GZZ6 450 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 BANF2Q9H503 90 aa18.3■□□□□ 0.52
CLK3-202ENST00000395066 F8W036 122 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 NUDT21O43809 227 aaKnown RBP18.29■□□□□ 0.52
CLK3-202ENST00000395066 PGAM2P15259 253 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 KLK2P20151 261 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 RAB13P51153 203 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 MMP16P51512 607 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 BLOC1S1P78537 153 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 FAM69BQ5VUD6 431 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 OGFOD3Q6PK18 319 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 SPAG16Q8N0X2 631 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 ZNF501Q96CX3 271 aaPredicted RBP18.29■□□□□ 0.52
CLK3-202ENST00000395066 ZNF768Q9H5H4 540 aaKnown RBP18.29■□□□□ 0.52
CLK3-202ENST00000395066 SERINC1Q9NRX5 453 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 ATPIF1Q9UII2 106 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 A0A0A6YYD4 124 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 ANKUB1A6NFN9 424 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 PI3P19957 117 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 KLHL24Q6TFL4 600 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 MFSD8Q8NHS3 518 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 STOML3Q8TAV4 291 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 PTX4Q96A99 478 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 SLC7A5P2Q9GIP4 190 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 B3GAT1Q9P2W7 334 aa18.29■□□□□ 0.52
CLK3-202ENST00000395066 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 A0A1W2PNR3 127 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 MPZP25189 248 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 CBX5P45973 191 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 DHRS7BQ6IAN0 325 aaPredicted RBP18.28■□□□□ 0.52
CLK3-202ENST00000395066 OR4K17Q8NGC6 315 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 ARL11Q969Q4 196 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 RAB33BQ9H082 229 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 ZNF319Q9P2F9 582 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 POLR1DQ9Y2S0 133 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 OR6C76A6NM76 312 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 F8VVB4 439 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 F8VWA3 439 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 PIAS2O75928 621 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 TIAF1O95411 115 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 TPT1P13693 172 aaKnown RBP18.28■□□□□ 0.52
CLK3-202ENST00000395066 RAB6AP20340 208 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 SRSF3P84103 164 aaKnown RBP18.28■□□□□ 0.52
CLK3-202ENST00000395066 C10orf91Q5T1B1 145 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 TMPRSS9Q7Z410 1059 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 PLXDC1Q8IUK5 500 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 SLC22A24Q8N4F4 322 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 CHMP1AQ9HD42 196 aaPredicted RBP18.28■□□□□ 0.52
CLK3-202ENST00000395066 KLRF1Q9NZS2 232 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 CSAG2Q9Y5P2 127 aa18.28■□□□□ 0.52
CLK3-202ENST00000395066 C5orf51A6NDU8 294 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 ZNF814B7Z6K7 855 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 SOCS1O15524 211 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 DUX1O43812 170 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 PSMB6P28072 239 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 ZNF93P35789 620 aaPredicted RBP18.27■□□□□ 0.52
CLK3-202ENST00000395066 OR3A4PP47883 348 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 MICBQ29980 383 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 H3F3CQ6NXT2 135 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 FAHD2BQ6P2I3 314 aaPredicted RBP18.27■□□□□ 0.52
CLK3-202ENST00000395066 DCUN1D4Q92564 292 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 FAHD2AQ96GK7 314 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 FAM71F1Q96KD3 344 aaPredicted RBP18.27■□□□□ 0.52
CLK3-202ENST00000395066 ESRP2Q9H6T0 727 aaKnown RBP18.27■□□□□ 0.52
CLK3-202ENST00000395066 CARHSP1Q9Y2V2 147 aaKnown RBP18.27■□□□□ 0.52
CLK3-202ENST00000395066 LHFPL6Q9Y693 200 aa18.27■□□□□ 0.52
CLK3-202ENST00000395066 LIPT2A6NK58 231 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 EFSO43281 561 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 RAMP1O60894 148 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 MPIG6BO95866 241 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 CRHP06850 196 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 CD79AP11912 226 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 HSD11B1P28845 292 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 EMP2P54851 167 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 NXPH1P58417 271 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 DCDP81605 110 aaKnown RBP18.27■□□□□ 0.51
CLK3-202ENST00000395066 C17orf67Q0P5P2 114 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 ZP4Q12836 540 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 MYBPHQ13203 477 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 PLEKHN1Q494U1 663 aaPredicted RBP18.27■□□□□ 0.51
CLK3-202ENST00000395066 ABHD12BQ7Z5M8 362 aaPredicted RBP18.27■□□□□ 0.51
CLK3-202ENST00000395066 BHLHE23Q8NDY6 225 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 TLNRD1Q9H1K6 362 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 IFT22Q9H7X7 185 aa18.27■□□□□ 0.51
CLK3-202ENST00000395066 TMEM100Q9NV29 134 aa18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms