RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ATP6V1B2P21281 511 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 OTX1P32242 354 aaPredicted RBP13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 RPS27P42677 84 aaKnown RBP13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 MAGEA2P43356 314 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 PITPNBP48739 271 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 GNGT1P63211 74 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 SNAI3Q3KNW1 292 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 ZNF770Q6IQ21 691 aaPredicted RBP13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 DRAM2Q6UX65 266 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 CYP2R1Q6VVX0 501 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 DCDC5Q6ZRR9 648 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 RASSF6Q6ZTQ3 369 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 C9orf139Q6ZV77 190 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 PARP8Q8N3A8 854 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 SLC37A3Q8NCC5 494 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 OR4C15Q8NGM1 316 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 OR8D4Q8NGM9 314 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 SGMS2Q8NHU3 365 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 ZNRF4Q8WWF5 429 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 UPRTQ96BW1 309 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 C1orf147Q96MC9 270 aaPredicted RBP13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 ZNF48Q96MX3 618 aaPredicted RBP13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 COMMD3-BMI1R4GMX3 469 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 KIR2DS1A0A191URI9 304 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 CCNB2O95067 398 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 GASTP01350 101 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 IGHV4-38-2P0DP08 117 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 PSKH1P11801 424 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 EGR1P18146 543 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 CA6P23280 308 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 MNAT1P51948 309 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 ZNF92Q03936 586 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 FOXL1Q12952 345 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 BAMBIQ13145 260 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 OR8G1Q15617 311 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 MPPED2Q15777 294 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 PRAMEF6Q5VXH4 476 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 LYPD4Q6UWN0 246 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 DCXRQ7Z4W1 244 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 LNX2Q8N448 690 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 OR51L1Q8NGJ5 315 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 DUX5Q96PT3 197 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 TSSK6Q9BXA6 273 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 MAGIXQ9H6Y5 334 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 UFSP2Q9NUQ7 469 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 TBC1D23Q9NUY8 699 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 CLN8Q9UBY8 286 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 BAIAP2Q9UQB8 552 aa13.83□□□□□ -0.2
CCDC28B-204ENST00000469003 GGT3PA6NGU5 568 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 PHYHO14832 338 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 GMDSO60547 372 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 PTBP3O95758 552 aaKnown RBP13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 PLATP00750 562 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 FMO3P31513 532 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 MTNR1AP48039 350 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 ENTPD1P49961 510 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 GYS2P54840 703 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 PCK2Q16822 640 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 GLYATL3Q5SZD4 288 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 WDR25Q64LD2 544 aaPredicted RBP13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 LYPD2Q6UXB3 125 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 ZNF841Q6ZN19 808 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 AQP11Q8NBQ7 271 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 PLPP7Q8NBV4 271 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 OR9Q1Q8NGQ5 310 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 OR2AE1Q8NHA4 323 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 NUDT16L1Q9BRJ7 211 aaKnown RBP13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 COPS4Q9BT78 406 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 ADAT1Q9BUB4 502 aaKnown RBP13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 FN3KRPQ9HA64 309 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 RNF7Q9UBF6 113 aa13.82□□□□□ -0.2
CCDC28B-204ENST00000469003 IGHV3OR16-10A0A075B7F0 116 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 TCRBV5S2A0A599 114 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 C5orf63A6NC05 138 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 CLDN34H7C241 214 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 RNASE1P07998 156 aaKnown RBP13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 SPARCP09486 303 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 ANOS1P23352 680 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 PSMB10P40306 273 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 SLC25A1P53007 311 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 CRMP1Q14194 572 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 TEX30Q5JUR7 227 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 ARHGAP24Q8N264 748 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 FITM2Q8N6M3 262 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 C19orf18Q8NEA5 215 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 OR4Q3Q8NH05 313 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 SLC25A28Q96A46 364 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 KCNJ15Q99712 375 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 ZNF747Q9BV97 191 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 DGCR6LQ9BY27 220 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 NMNAT2Q9BZQ4 307 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 MUC13Q9H3R2 512 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 OPA3Q9H6K4 179 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 MRPL15Q9P015 296 aaKnown RBP13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 PCDHGB1Q9Y5G3 927 aa13.81□□□□□ -0.2
CCDC28B-204ENST00000469003 TRAV40A0A0B4J280 105 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 B2RBV5 119 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 ZNF878C9JN71 531 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 LGALS8O00214 317 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 ZNF593O00488 134 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms