RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SEC22CQ9BRL7 303 aa13.74□□□□□ -0.21
CCDC40-202ENST00000374876 METTL17Q9H7H0 456 aaPredicted RBP13.74□□□□□ -0.21
CCDC40-202ENST00000374876 CGGBP1Q9UFW8 167 aaPredicted RBP13.74□□□□□ -0.21
CCDC40-202ENST00000374876 FBXL2Q9UKC9 423 aa13.74□□□□□ -0.21
CCDC40-202ENST00000374876 NPTNQ9Y639 398 aa13.74□□□□□ -0.21
CCDC40-202ENST00000374876 COL6A6A6NMZ7 2263 aa13.74□□□□□ -0.21
CCDC40-202ENST00000374876 TRAV17A0A0B4J275 112 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 A0A1W2PPL8 197 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 P2RY10O00398 339 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 CREBL2O60519 120 aaPredicted RBP13.73□□□□□ -0.21
CCDC40-202ENST00000374876 GTF2F2P13984 249 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 SELENOPP49908 381 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 MMP16P51512 607 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 GPR85P60893 370 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 SPOCK1Q08629 439 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 OPN5Q6U736 354 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 ADPRHL1Q8NDY3 354 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 OR8H1Q8NGG4 311 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 OR51A2Q8NGJ7 313 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 OR4C16Q8NGL9 310 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 OR2T35Q8NGX2 323 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 SLAMF6Q96DU3 332 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 PTGES2Q9H7Z7 377 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 KLHL13Q9P2N7 655 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 EML6Q6ZMW3 1958 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 A0A1W2PNR3 127 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 MEIS3P1A6NDR6 274 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 TP53I11O14683 189 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 IGHG1P01857 330 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 SP1P08047 785 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 LAP3P28838 519 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 RBMS2Q15434 407 aaKnown RBP13.73□□□□□ -0.21
CCDC40-202ENST00000374876 ZNF627Q7L945 461 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 NLRC3Q7RTR2 1065 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 ADGRE4PQ86SQ3 457 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 GINS4Q9BRT9 223 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 MRPL13Q9BYD1 178 aaKnown RBP13.73□□□□□ -0.21
CCDC40-202ENST00000374876 C1orf198Q9H425 327 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 NPDC1Q9NQX5 325 aaPredicted RBP13.73□□□□□ -0.21
CCDC40-202ENST00000374876 MGAT4CQ9UBM8 478 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 CYB5R1Q9UHQ9 305 aa13.73□□□□□ -0.21
CCDC40-202ENST00000374876 G3V3Y1 287 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 IL5P05113 134 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 AKAIN1P0CW23 69 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 CPN1P15169 458 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 CD46P15529 392 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 MECP2P51608 486 aaKnown RBP13.72□□□□□ -0.21
CCDC40-202ENST00000374876 GNG2P59768 71 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 FOXK1P85037 733 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 PRR30Q53SZ7 412 aaPredicted RBP13.72□□□□□ -0.21
CCDC40-202ENST00000374876 SEZ6L2Q6UXD5 910 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 GALNTL5Q7Z4T8 443 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 CISD2Q8N5K1 135 aaKnown RBP13.72□□□□□ -0.21
CCDC40-202ENST00000374876 NKAIN3Q8N8D7 197 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 NOXO1Q8NFA2 376 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 CHIAQ9BZP6 476 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 SEC61A2Q9H9S3 476 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 POLR1DQ9Y2S0 133 aa13.72□□□□□ -0.21
CCDC40-202ENST00000374876 SNRPGP15A8MWD9 76 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 B8ZZF3 427 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 PYCARD-AS1I3L0S3 204 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 LMX1BO60663 402 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 CD37P11049 281 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 SFTPDP35247 375 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 EIF1P41567 113 aaKnown RBP13.71□□□□□ -0.21
CCDC40-202ENST00000374876 ACTBP60709 375 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 ACTG1P63261 375 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 SSBP1Q04837 148 aaKnown RBP13.71□□□□□ -0.21
CCDC40-202ENST00000374876 PRAMEF20Q5VT98 475 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 NHLRC1Q6VVB1 395 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 HDDC2Q7Z4H3 204 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 WDSUB1Q8N9V3 476 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 OR4D10Q8NGI6 311 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 SLC25A43Q8WUT9 341 aaPredicted RBP13.71□□□□□ -0.21
CCDC40-202ENST00000374876 GAL3ST1Q99999 423 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 FAM206AQ9NX38 181 aa13.71□□□□□ -0.21
CCDC40-202ENST00000374876 EIF3KQ9UBQ5 218 aaKnown RBP13.71□□□□□ -0.21
CCDC40-202ENST00000374876 TOXO94900 526 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 TPOP07202 933 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 ACSM4P0C7M7 580 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 PGA4P0DJD7 388 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 PGA3P0DJD8 388 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 CCL3P10147 92 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 PER3P56645 1201 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 PMP22Q01453 160 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 ZNF626Q68DY1 528 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 SPICQ8N5J4 248 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 OR2AJ1Q8NGZ0 328 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 FGGYQ96C11 551 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 FOXRED1Q96CU9 486 aaPredicted RBP13.71□□□□□ -0.22
CCDC40-202ENST00000374876 SORCS2Q96PQ0 1159 aa13.71□□□□□ -0.22
CCDC40-202ENST00000374876 CHCHD2Q9Y6H1 151 aaPredicted RBP13.71□□□□□ -0.22
CCDC40-202ENST00000374876 CFAP46Q8IYW2 2715 aa13.7□□□□□ -0.22
CCDC40-202ENST00000374876 SULT1C2O00338 296 aa13.7□□□□□ -0.22
CCDC40-202ENST00000374876 TRAF3IP2O43734 574 aaPredicted RBP13.7□□□□□ -0.22
CCDC40-202ENST00000374876 RLN1P04808 185 aa13.7□□□□□ -0.22
CCDC40-202ENST00000374876 FCER2P06734 321 aa13.7□□□□□ -0.22
CCDC40-202ENST00000374876 LPLP06858 475 aa13.7□□□□□ -0.22
CCDC40-202ENST00000374876 GABRA1P14867 456 aa13.7□□□□□ -0.22
CCDC40-202ENST00000374876 FKBP2P26885 142 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms