RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 PHF1O43189 567 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 PRAMEF11O60813 436 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 MPDU1O75352 247 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 SCO1O75880 301 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 DNAL4O96015 105 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 GYPAP02724 150 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 CBR1P16152 277 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 CXCL9Q07325 125 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 OR7A5Q15622 319 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ZNF528Q3MIS6 628 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 MRPL21Q7Z2W9 205 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 TMEM229BQ8NBD8 167 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 FAM110BQ8TC76 370 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 HMCESQ96FZ2 354 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 HBEGFQ99075 208 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 TUBA4BQ9H853 241 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 HEYLQ9NQ87 328 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 KLK14Q9P0G3 267 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 LRRC30A6NM36 301 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 CXorf49A8MYA2 514 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 TCF21O43680 179 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 OPN1SWP03999 348 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 VTNP04004 478 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 HSPB1P04792 205 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 GNSP15586 552 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 DSC2Q02487 901 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 RIGQ13278 110 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 LBX2Q6XYB7 198 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 Q7L0L9 218 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 BATF2Q8N1L9 274 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 GPR137Q96N19 417 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 LOC730098B7Z3J9 87 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 BUD23O43709 281 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 PTP4A3O75365 173 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 OR2J2O76002 312 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 HEXAP06865 529 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ICAM2P13598 275 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ACAA2P42765 397 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 CTXN1P60606 82 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 DCDP81605 110 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 LEXMQ3ZCV2 418 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 TMIGD2Q96BF3 282 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 MMABQ96EY8 250 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 LMF1Q96S06 567 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ACPTQ9BZG2 426 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 SALL4Q9UJQ4 1053 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 COL14A1Q05707 1796 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 PLSCR5A0PG75 271 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 MBTPS2O43462 519 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 TTRP02766 147 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 IL2RGP31785 369 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 TMEM249Q2WGJ8 235 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 CDC42EP5Q6NZY7 148 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 FIGLAQ6QHK4 219 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 SCGB1D4Q6XE38 83 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 LRRTM3Q86VH5 581 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 LRRC15Q8TF66 581 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 PRR11Q96HE9 360 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 YIPF1Q9Y548 306 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 MRPL3P09001 348 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 INHBBP09529 407 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ARRB2P32121 409 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 GSG1Q2KHT4 349 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ZNF468Q5VIY5 522 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ZNF626Q68DY1 528 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 FAM71E1Q6IPT2 247 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 CAMKMTQ7Z624 323 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 TSEN54Q7Z6J9 526 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ZBP1Q9H171 429 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ANXA10Q9UJ72 324 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 KIAA1549LQ6ZVL6 1849 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 CSO75390 466 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 SFTPCP11686 197 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 NTSR1P30989 418 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 SH3BP2P78314 561 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 TESK1Q15569 626 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ARSIQ5FYB1 569 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 FAM26DQ5JW98 314 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 RPS4Y2Q8TD47 263 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ABHD5Q8WTS1 349 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 CA5BP1Q8WTZ4 195 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ATG4CQ96DT6 458 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 IGSF23A1L1A6 192 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 SLC25A5P05141 298 aaKnown RBP4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ATF1P18846 271 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 OR1C1Q15619 314 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ZNF766Q5HY98 468 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 MS4A13Q5J8X5 152 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 TMEM136Q6ZRR5 245 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 GJC3Q8NFK1 279 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 OR5D13Q8NGL4 314 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 FGF14Q92915 247 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 OSGIN2Q9Y236 505 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 FLVCR1Q9Y5Y0 555 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 S1PR4O95977 384 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 EPHX1P07099 455 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 SELEP16581 610 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 ACHEP22303 614 aa4.43□□□□□ -1.7
CSMD3-201ENST00000297405 SUCLG1P53597 346 aaKnown RBP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms