RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CIB4A0PJX0 185 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 ARL6IP5O75915 188 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 UBL3O95164 117 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 CAV3P56539 151 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 HSD17B12Q53GQ0 312 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 TMEM244Q5VVB8 128 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 NR2C2APQ86WQ0 139 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 ZNF584Q8IVC4 421 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 TSEN15Q8WW01 171 aaKnown RBP16.21■□□□□ 0.19
CLN3-206ENST00000360019 PHYHIPQ92561 330 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 ATPIF1Q9UII2 106 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 HHLA2Q9UM44 414 aa16.21■□□□□ 0.19
CLN3-206ENST00000360019 IGSF10Q6WRI0 2623 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 TRBV5-7A0A0A0MS05 114 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 NCR1O76036 304 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 ARR3P36575 388 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 ZNF474Q6S9Z5 364 aaPredicted RBP16.2■□□□□ 0.18
CLN3-206ENST00000360019 DRAM2Q6UX65 266 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 BEND4Q6ZU67 534 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 DPPA2Q7Z7J5 298 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 CXorf67Q86X51 503 aaPredicted RBP16.2■□□□□ 0.18
CLN3-206ENST00000360019 OR51E1Q8TCB6 317 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 ASB5Q8WWX0 329 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 TMEM106AQ96A25 262 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 BOD1Q96IK1 185 aa16.2■□□□□ 0.18
CLN3-206ENST00000360019 LOC100509620A0A075B734 347 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 TRAV1-2A0A0B4J238 106 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 A0A1B0GTI1 187 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 CLPXO76031 633 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 APOC1P02654 83 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 MYL9P24844 172 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 MAPK3P27361 379 aaPredicted RBP16.19■□□□□ 0.18
CLN3-206ENST00000360019 APEX1P27695 318 aaKnown RBP16.19■□□□□ 0.18
CLN3-206ENST00000360019 TPTEP56180 551 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 HNRNPA0Q13151 305 aaKnown RBP16.19■□□□□ 0.18
CLN3-206ENST00000360019 GSG1Q2KHT4 349 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 SNAI3Q3KNW1 292 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 TMEM53Q6P2H8 277 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 MDP1Q86V88 176 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 C1orf162Q8NEQ5 155 aaPredicted RBP16.19■□□□□ 0.18
CLN3-206ENST00000360019 NANOS1Q8WY41 292 aaKnown RBP16.19■□□□□ 0.18
CLN3-206ENST00000360019 ZNF75AQ96N20 296 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 KCNS3Q9BQ31 491 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 SOX7Q9BT81 388 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 DHDHQ9UQ10 334 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 COL6A6A6NMZ7 2263 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 A0A1W2PR80 420 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 ANKRD61A6NGH8 418 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 RORCP51449 518 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 P2RY6Q15077 328 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 ZNF404Q494X3 552 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 ASPHD2Q6ICH7 369 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 LUZP2Q86TE4 346 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 TBC1D15Q8TC07 691 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 PGAM5Q96HS1 289 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 NXF2Q9GZY0 626 aaKnown RBP16.19■□□□□ 0.18
CLN3-206ENST00000360019 GPR84Q9NQS5 396 aa16.19■□□□□ 0.18
CLN3-206ENST00000360019 TRGV8A0A0C4DH27 118 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 LMX1BO60663 402 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 IGLV3-1P01715 115 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 RAF1P04049 648 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 COX5BP10606 129 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 SRMP19623 302 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 BMP5P22003 454 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 OPRM1P35372 400 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 SOX6P35712 828 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 GFOD2Q3B7J2 385 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 MCFD2Q8NI22 146 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 WBP1Q96G27 269 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 MS4A3Q96HJ5 214 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 DMRTA2Q96SC8 542 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 PCNX1Q96RV3 2341 aa16.18■□□□□ 0.18
CLN3-206ENST00000360019 SYT7O43581 403 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 CCL2P13500 99 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 CCL1P22362 96 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 STOMP27105 288 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 OR10A3P58181 314 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 TPRA1Q86W33 373 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 OR13C3Q8NGS6 347 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 LYZL4Q96KX0 146 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 CNTNAP3BQ96NU0 1288 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 VKORC1Q9BQB6 163 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 CNTNAP3Q9BZ76 1288 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 ZNF629Q9UEG4 869 aaPredicted RBP16.17■□□□□ 0.18
CLN3-206ENST00000360019 PLEKHB1Q9UF11 243 aaPredicted RBP16.17■□□□□ 0.18
CLN3-206ENST00000360019 TRAV8-7A0A075B6U6 113 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 ARPC4-TTLL3A0A0A6YYG9 625 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 A0A0G2JK05 382 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 A0A0U1RQV5 110 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 MSTNO14793 375 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 TBX1O43435 398 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 UBE2NP61088 152 aaKnown RBP16.17■□□□□ 0.18
CLN3-206ENST00000360019 CEP78Q5JTW2 689 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 CCDC36Q8IYA8 594 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 WDR31Q8NA23 367 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 THRSPQ92748 146 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 POM121L2Q96KW2 1035 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 MEMO1Q9Y316 297 aa16.17■□□□□ 0.18
CLN3-206ENST00000360019 CACNA1BQ00975 2339 aa16.16■□□□□ 0.18
CLN3-206ENST00000360019 ADGRG4Q8IZF6 3080 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms