RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 POLQO75417 2590 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 DAPL1A0PJW8 107 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 IGHA1P01876 353 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 CX3CR1P49238 355 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 ZNF85Q03923 595 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 EGR3Q06889 387 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 HIST2H2ABQ8IUE6 130 aaPredicted RBP25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 ZNF679Q8IYX0 411 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 FBXW5Q969U6 566 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 DOK1Q99704 481 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 ELOVL3Q9HB03 270 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 CISD1Q9NZ45 108 aaKnown RBP25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 SPG11Q96JI7 2443 aa25.53■■□□□ 1.68
LIMCH1-211ENST00000509638 IRGMA1A4Y4 181 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 MAGEB4O15481 346 aaPredicted RBP25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 DENRO43583 198 aaKnown RBP25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 NGFP01138 241 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 ERVS71-1P61550 626 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 AHSA2Q719I0 299 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 ZNF283Q8N7M2 679 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 IPCEF1Q8WWN9 437 aaPredicted RBP25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 BCL2L14Q9BZR8 327 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 PLEKHF2Q9H8W4 249 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 CSMD2Q7Z408 3487 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 CACNA1DQ01668 2161 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 EFCAB10A6NFE3 127 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 LCKP06239 509 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 RAD52P43351 418 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 RGS6P49758 472 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 RPS23P62266 143 aaKnown RBP25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 DEGS2Q6QHC5 323 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 DRAM2Q6UX65 266 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 UNQ6126/PRO20091Q6UXV3 157 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 TMEM171Q8WVE6 324 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 GGHQ92820 318 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 FGF20Q9NP95 211 aaPredicted RBP25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 TBCCD1Q9NVR7 557 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 CNOT2Q9NZN8 540 aaKnown RBP25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 PSORS1C1Q9UIG5 152 aa25.52■■□□□ 1.68
LIMCH1-211ENST00000509638 SLC2A1P11166 492 aa25.51■■□□□ 1.67
LIMCH1-211ENST00000509638 PIPP12273 146 aaPredicted RBP25.51■■□□□ 1.67
LIMCH1-211ENST00000509638 THBS4P35443 961 aa25.51■■□□□ 1.67
LIMCH1-211ENST00000509638 SPATA46Q5T0L3 261 aa25.51■■□□□ 1.67
LIMCH1-211ENST00000509638 NAA40Q86UY6 237 aa25.51■■□□□ 1.67
LIMCH1-211ENST00000509638 OR1J1Q8NGS3 322 aa25.51■■□□□ 1.67
LIMCH1-211ENST00000509638 SNX33Q8WV41 574 aa25.51■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF442Q9H7R0 627 aa25.51■■□□□ 1.67
LIMCH1-211ENST00000509638 MRM2Q9UI43 246 aaKnown RBP25.51■■□□□ 1.67
LIMCH1-211ENST00000509638 SETXQ7Z333 2677 aaKnown RBP25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF254O75437 659 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 KRT8P05787 483 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 ADRA2AP08913 450 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 GLRXP35754 106 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 RIDAP52758 137 aaKnown RBP25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 KRTAP10-9P60411 292 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 PSMA6P60900 246 aaKnown RBP25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 PPP1CBP62140 327 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF540Q8NDQ6 660 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 APOBEC3DQ96AK3 386 aaPredicted RBP25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 DHRS9Q9BPW9 319 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 C1QTNF5Q9BXJ0 243 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 NIPAL2Q9H841 368 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 INPP5EQ9NRR6 644 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 UBAP1Q9NZ09 502 aa25.5■■□□□ 1.67
LIMCH1-211ENST00000509638 ANKRD17O75179 2603 aaKnown RBP25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 ANOS1P23352 680 aa25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 DCKP27707 260 aa25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF121P58317 390 aaPredicted RBP25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 CSNK2BP67870 215 aa25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 PLEKHG7Q6ZR37 379 aa25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 LHFPL3Q86UP9 236 aa25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF786Q8N393 782 aa25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 ALG8Q9BVK2 526 aa25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 ERVK13-1Q9NX77 482 aa25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 DIMT1Q9UNQ2 313 aaKnown RBP25.49■■□□□ 1.67
LIMCH1-211ENST00000509638 J3QW42 95 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 APOC1P02654 83 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 LCATP04180 440 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 ANXA2P07355 339 aaKnown RBP25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 ST3GAL4Q11206 333 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 ADIPOQQ15848 244 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 MSMPQ1L6U9 139 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF684Q5T5D7 378 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 RGS7BPQ6MZT1 257 aaPredicted RBP25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 COLCA1Q6ZS62 124 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 JAM3Q9BX67 310 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 BRD7Q9NPI1 651 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 SCN3BQ9NY72 215 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 GNG8Q9UK08 70 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 DSCAMO60469 2012 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 CCDC159P0C7I6 412 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 FABP6P51161 128 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 ACTA2P62736 377 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 ACTG2P63267 376 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 GALEQ14376 348 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 SNAI3Q3KNW1 292 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 CDONQ4KMG0 1287 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 TP53I3Q53FA7 332 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF544Q6NX49 715 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 FAM220AQ7Z4H9 259 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms