RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 LCN6P62502 163 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 GNB2P62879 340 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 HIST1H3AP68431 136 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 COX10Q12887 443 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 ZNF154Q13106 437 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 RFX4Q33E94 735 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 HIST2H3PS2Q5TEC6 136 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 CD276Q5ZPR3 534 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 CGB2Q6NT52 195 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 C1orf94Q6P1W5 598 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 SHISA2Q6UWI4 295 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 HIST2H3AQ71DI3 136 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 OR11L1Q8NGX0 322 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 ITLN1Q8WWA0 313 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 GTF3AQ92664 365 aaKnown RBP5.96□□□□□ -1.46
VPS41-208ENST00000448833 SPTSSAQ969W0 71 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 ITPKCQ96DU7 683 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 PYURFQ96I23 114 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 ERMAPQ96PL5 475 aaPredicted RBP5.96□□□□□ -1.46
VPS41-208ENST00000448833 SLC6A7Q99884 636 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 SSBP3Q9BWW4 388 aaPredicted RBP5.96□□□□□ -1.46
VPS41-208ENST00000448833 PLA2G12AQ9BZM1 189 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 MS4A7Q9GZW8 240 aaPredicted RBP5.96□□□□□ -1.46
VPS41-208ENST00000448833 NSRP1Q9H0G5 558 aaKnown RBP5.96□□□□□ -1.46
VPS41-208ENST00000448833 SRA1Q9HD15 236 aaKnown RBP5.96□□□□□ -1.46
VPS41-208ENST00000448833 KIF17Q9P2E2 1029 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 OPN4Q9UHM6 478 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 MAGEL2Q9UJ55 1249 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 INSIG2Q9Y5U4 225 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 F5H0A9 414 aaPredicted RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 CLDN34H7C241 214 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 RER1O15258 196 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 ATP8B1O43520 1251 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 NDUFA2O43678 99 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 GMDSO60547 372 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 HLA-DQA2P01906 255 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 SCG5P05408 212 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 LIPFP07098 398 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 WNT2P09544 360 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 HKR1P10072 659 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 HSD17B1P14061 328 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 RPS2P15880 293 aaKnown RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 ZNF26P17031 533 aaPredicted RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 FPR3P25089 353 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 ZFP36P26651 326 aaKnown RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 RRM2P31350 389 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 CDKN2AP42771 156 aaKnown RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 GATA4P43694 442 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 MNAT1P51948 309 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 BLVRAP53004 296 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 UBA52P62987 128 aaKnown RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 IL13RA1P78552 427 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 PAX8Q06710 450 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 SF3A3Q12874 501 aaKnown RBP eCLIP5.95□□□□□ -1.46
VPS41-208ENST00000448833 ZMYND11Q15326 602 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 C11orf91Q3C1V1 193 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 CCDC92Q53HC0 331 aaPredicted RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 SAMD4BQ5PRF9 694 aaKnown RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 Q6ZR03 302 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 DOK3Q7L591 496 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 CPLX4Q7Z7G2 160 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 ZBTB46Q86UZ6 589 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 KLBQ86Z14 1044 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 SPERTQ8NA61 448 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 OR8B3Q8NGG8 313 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 OR52E2Q8NGJ4 325 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 OR4C15Q8NGM1 316 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 FANK1Q8TC84 345 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 GNPDA2Q8TDQ7 276 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 RAB40AQ8WXH6 277 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 DVL3Q92997 716 aaPredicted RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 NEIL1Q96FI4 390 aaPredicted RBP5.95□□□□□ -1.46
VPS41-208ENST00000448833 C7orf34Q96L11 122 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 DHRS1Q96LJ7 313 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 OR8B2Q96RD0 313 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 PITX2Q99697 317 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 ATF6BQ99941 703 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 SLC30A2Q9BRI3 323 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 IFT27Q9BW83 186 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 C1QTNF5Q9BXJ0 243 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 OPA3Q9H6K4 179 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 ZFAND3Q9H8U3 227 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 SP140LQ9H930 580 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 PTTG3PQ9NZH4 202 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 B9D1Q9UPM9 204 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 PPIAL4AQ9Y536 164 aa5.95□□□□□ -1.46
VPS41-208ENST00000448833 IGLV1-36A0A0B4J1U3 117 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.94□□□□□ -1.46
VPS41-208ENST00000448833 TRBV4-1A0A0J9YWV2 114 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 A0A1B0GUS0 222 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 A0A1B0GWJ7 208 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 CEACAM18A8MTB9 384 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 TRAPPC2LH3BP13 241 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 PHYHO14832 338 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 OR10H3O60404 316 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 RGS9O75916 674 aaPredicted RBP5.94□□□□□ -1.46
VPS41-208ENST00000448833 APOC1P02654 83 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 LCATP04180 440 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 FABP3P05413 133 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 NCK1P16333 377 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms