RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CDCP2Q5VXM1 449 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 ADGRE4PQ86SQ3 457 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 OR5D14Q8NGL3 314 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 PNPLA2Q96AD5 504 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 UCN2Q96RP3 112 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 NKX3-1Q99801 234 aaPredicted RBP11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 TRAF4Q9BUZ4 470 aaPredicted RBP11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 NKIRAS2Q9NYR9 191 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 EMC3Q9P0I2 261 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 SDK2Q58EX2 2172 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 FRYLO94915 3013 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 CCDC187A0A096LP49 1063 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 CDX4O14627 284 aaPredicted RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 RER1O15258 196 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 PRAF2O60831 178 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 KDM4BO94953 1096 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 GABRA1P14867 456 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ZNF20P17024 532 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 AVPR2P30518 371 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 PRSS3P35030 304 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 PRKXP51817 358 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 B3GALT5-AS1P59052 145 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 FAPQ12884 760 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 PCGF3Q3KNV8 242 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 FGD2Q7Z6J4 655 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 BEST3Q8N1M1 668 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 OR1M1Q8NGA1 313 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 OR1J2Q8NGS2 313 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 INTS12Q96CB8 462 aaKnown RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ZNF385AQ96PM9 386 aaKnown RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 SF3B5Q9BWJ5 86 aaKnown RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 GPR87Q9BY21 358 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 NELFAQ9H3P2 528 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 TMEM138Q9NPI0 162 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 PNRC2Q9NPJ4 139 aaKnown RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 FOXJ2Q9P0K8 574 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 NCKAP5O14513 1909 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ALDOBP05062 364 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 CX3CR1P49238 355 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 GZMKP49863 264 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ZNF133P52736 654 aaPredicted RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ZNF121P58317 390 aaPredicted RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 RAC3P60763 192 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 OC90Q02509 493 aaPredicted RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 SSBP1Q04837 148 aaKnown RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 EIF3IQ13347 325 aaKnown RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ZNF813Q6ZN06 617 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ZNF627Q7L945 461 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 YRDCQ86U90 279 aaKnown RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 BIVMQ86UB2 503 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 COMMD2Q86X83 199 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 TMEM123Q8N131 208 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 OR51E1Q8TCB6 317 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 PTX4Q96A99 478 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ADAT3Q96EY9 351 aaPredicted RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 THOC3Q96J01 351 aaKnown RBP11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ZNF416Q9BWM5 594 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 SRXN1Q9BYN0 137 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 OR10A4Q9H209 315 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 ZNF222Q9UK12 451 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 PCSK5Q92824 1860 aa11.44□□□□□ -0.58
SPTLC1-201ENST00000262554 A0A0A6YYH2 397 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 A0A1B0GTI1 187 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 A6NJ64 397 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 C21orf140B9A014 251 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 SSNA1O43805 119 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 MT-CO3P00414 261 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 ERCC1P07992 297 aaPredicted RBP11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 RAB3AP20336 220 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 RAB6AP20340 208 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 ENPP1P22413 925 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 DLSTP36957 453 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 SUCLG1P53597 346 aaKnown RBP11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 NDUFA5Q16718 116 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 ST3GAL2Q16842 350 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 PHYHD1Q5SRE7 291 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 FOXL2NBQ6ZUU3 175 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 ABHD12BQ7Z5M8 362 aaPredicted RBP11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 SLC22A24Q8N4F4 322 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 ZNF283Q8N7M2 679 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 ASCC1Q8N9N2 400 aaKnown RBP11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 GJC3Q8NFK1 279 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 OR11H7Q8NGC8 314 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 OR8B12Q8NGG6 310 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 ZFAND1Q8TCF1 268 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 CDC6Q99741 560 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 TMEM246Q9BRR3 403 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 UQCC2Q9BRT2 126 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 NOX3Q9HBY0 568 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 MRPS18CQ9Y3D5 142 aaKnown RBP11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 R4GN57 208 aa11.43□□□□□ -0.58
SPTLC1-201ENST00000262554 LRRC3CA6NJW4 275 aa11.42□□□□□ -0.58
SPTLC1-201ENST00000262554 SULT1C2O00338 296 aa11.42□□□□□ -0.58
SPTLC1-201ENST00000262554 ARPC1BO15143 372 aaKnown RBP11.42□□□□□ -0.58
SPTLC1-201ENST00000262554 LDLRAD4O15165 306 aa11.42□□□□□ -0.58
SPTLC1-201ENST00000262554 SMAD9O15198 467 aaKnown RBP11.42□□□□□ -0.58
SPTLC1-201ENST00000262554 DHHO43323 396 aa11.42□□□□□ -0.58
SPTLC1-201ENST00000262554 TRAPPC6AO75865 159 aa11.42□□□□□ -0.58
SPTLC1-201ENST00000262554 TGM6O95932 706 aa11.42□□□□□ -0.58
SPTLC1-201ENST00000262554 SLC2A1P11166 492 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms