RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 GABARAPL3Q9BY60 117 aa10.19□□□□□ -0.78
VPS52-213ENST00000461743 MS4A5Q9H3V2 200 aa10.19□□□□□ -0.78
VPS52-213ENST00000461743 MARCH7Q9H992 704 aa10.19□□□□□ -0.78
VPS52-213ENST00000461743 DLL4Q9NR61 685 aa10.19□□□□□ -0.78
VPS52-213ENST00000461743 DDX28Q9NUL7 540 aaKnown RBP10.19□□□□□ -0.78
VPS52-213ENST00000461743 CHCHD3Q9NX63 227 aaKnown RBP10.19□□□□□ -0.78
VPS52-213ENST00000461743 GDF2Q9UK05 429 aaPredicted RBP10.19□□□□□ -0.78
VPS52-213ENST00000461743 OAZ3Q9UMX2 235 aa10.19□□□□□ -0.78
VPS52-213ENST00000461743 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.19□□□□□ -0.781e-9■■■■□ 19.7
VPS52-213ENST00000461743 A0A1W2PPW3 197 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 NDUFS8O00217 210 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 GPANK1O95872 356 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 F12P00748 615 aaPredicted RBP10.18□□□□□ -0.78
VPS52-213ENST00000461743 IGHV3-13P01766 116 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 MT-ND5P03915 603 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 CD99P14209 185 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 GCH1P30793 250 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 PPP1CBP62140 327 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 MSMPQ1L6U9 139 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 KRTAP27-1Q3LI81 207 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 ZMAT1Q5H9K5 638 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 FAM209AQ5JX71 171 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 LINC01590Q5TEZ4 76 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 FOXB2Q5VYV0 432 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 ACSM5Q6NUN0 579 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 CLEC2AQ6UVW9 174 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 OR6K6Q8NGW6 343 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 ABHD4Q8TB40 342 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 STMN2Q93045 179 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 MARS2Q96GW9 593 aaKnown RBP10.18□□□□□ -0.78
VPS52-213ENST00000461743 COX4I2Q96KJ9 171 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 SORCS2Q96PQ0 1159 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 ATF6BQ99941 703 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 CYSLTR2Q9NS75 346 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 USE1Q9NZ43 259 aa10.18□□□□□ -0.78
VPS52-213ENST00000461743 ZAR1LA6NP61 321 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 FAM171A2A8MVW0 826 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 SLC25A16P16260 332 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 OTX1P32242 354 aaPredicted RBP10.17□□□□□ -0.78
VPS52-213ENST00000461743 LIPAP38571 399 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 PTGES3Q15185 160 aaKnown RBP10.17□□□□□ -0.78
VPS52-213ENST00000461743 NKPD1Q17RQ9 610 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 PCGF3Q3KNV8 242 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 LCN1P1Q5VSP4 162 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 SLX4IPQ5VYV7 408 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 CFAP77Q6ZQR2 320 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 RHOUQ7L0Q8 258 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 SHFQ7M4L6 423 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.17□□□□□ -0.78
VPS52-213ENST00000461743 LURAP1LQ8IV03 231 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 LINC00346Q8IVM7 164 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 ICA1LQ8NDH6 482 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 OR5L1Q8NGL2 311 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 APOBEC3DQ96AK3 386 aaPredicted RBP10.17□□□□□ -0.78
VPS52-213ENST00000461743 C18orf12Q96KH6 178 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 INTS14Q96SY0 518 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 ZNF184Q99676 751 aaPredicted RBP10.17□□□□□ -0.78
VPS52-213ENST00000461743 PITX2Q99697 317 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 CIB1Q99828 191 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 VRK1Q99986 396 aaPredicted RBP10.17□□□□□ -0.78
VPS52-213ENST00000461743 SYT3Q9BQG1 590 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 SEMA6AQ9H2E6 1030 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 S100A14Q9HCY8 104 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 PNRC2Q9NPJ4 139 aaKnown RBP10.17□□□□□ -0.78
VPS52-213ENST00000461743 HINT3Q9NQE9 182 aaKnown RBP10.17□□□□□ -0.78
VPS52-213ENST00000461743 TMEFF2Q9UIK5 374 aaPredicted RBP10.17□□□□□ -0.78
VPS52-213ENST00000461743 ORC6Q9Y5N6 252 aa10.17□□□□□ -0.78
VPS52-213ENST00000461743 ABCA1O95477 2261 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 TVP23AA6NH52 213 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 FAM183AA6NL82 134 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 ZNF878C9JN71 531 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 SSX4O60224 188 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 NDUFS7O75251 213 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 ALPLP05186 524 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 GYPBP06028 91 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 SPARCP09486 303 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 CLUP10909 449 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 SLC2A5P22732 501 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 GSTT1P30711 240 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 PDLIM4P50479 330 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 ALDH3A2P51648 485 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 RAD23AP54725 363 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 ERVS71-1P61550 626 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 GRB2P62993 217 aaKnown RBP10.16□□□□□ -0.78
VPS52-213ENST00000461743 MRPS11P82912 194 aaKnown RBP10.16□□□□□ -0.78
VPS52-213ENST00000461743 SNAPC1Q16533 368 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 C12orf73Q69YU5 71 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 PLBD1Q6P4A8 553 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 CORO6Q6QEF8 472 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 CXXC5Q7LFL8 322 aaKnown RBP10.16□□□□□ -0.78
VPS52-213ENST00000461743 BIVMQ86UB2 503 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 PQLC1Q8N2U9 271 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 ZNF454Q8N9F8 522 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 OR51L1Q8NGJ5 315 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 SLC25A40Q8TBP6 338 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 KLF14Q8TD94 323 aaPredicted RBP10.16□□□□□ -0.78
VPS52-213ENST00000461743 SPTSSAQ969W0 71 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 MAP6Q96JE9 813 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 PKP2Q99959 881 aa10.16□□□□□ -0.78
VPS52-213ENST00000461743 RHNO1Q9BSD3 238 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms