RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 RNASE10Q5GAN6 216 aaKnown RBP16.73■□□□□ 0.27
CPSF3-201ENST00000238112 C17orf107Q6ZR85 190 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 H1FNTQ75WM6 255 aaPredicted RBP16.73■□□□□ 0.27
CPSF3-201ENST00000238112 CD163Q86VB7 1156 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 PLXDC1Q8IUK5 500 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 OR4S1Q8NGB4 309 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 OR13C8Q8NGS7 320 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 OR6S1Q8NH40 331 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 PRRT1Q99946 306 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 SHARPINQ9H0F6 387 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 COMMD9Q9P000 198 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 DUX4Q9UBX2 424 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 GPN3Q9UHW5 284 aaPredicted RBP16.73■□□□□ 0.27
CPSF3-201ENST00000238112 RAB22AQ9UL26 194 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 SEC16AO15027 2179 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 FREM3P0C091 2139 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 COL5A1P20908 1838 aaPredicted RBP16.73■□□□□ 0.27
CPSF3-201ENST00000238112 IGHV1OR21-1A0A087WYE8 117 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 CD8AP01732 235 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 GNALP38405 381 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 ZP4Q12836 540 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 PCK2Q16822 640 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 CORO6Q6QEF8 472 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 SHISA6Q6ZSJ9 500 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 ST8SIA1Q92185 356 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 AQP3Q92482 292 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 ZBTB8AQ96BR9 441 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 FGGYQ96C11 551 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 ARL5BQ96KC2 179 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 DMRTA2Q96SC8 542 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 A0A1B0GTI1 187 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 LOC101059948A0A1B0GTJ6 334 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 C2orf72A6NCS6 295 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 ANKUB1A6NFN9 424 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 TMEM200CA6NKL6 621 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 BDKRB2P30411 391 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 RNF4P78317 190 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 TLE3Q04726 772 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 PHF19Q5T6S3 580 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 TRAPPC6BQ86SZ2 158 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 FJX1Q86VR8 437 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 CARFQ8N187 725 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 D2HGDHQ8N465 521 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 CHST4Q8NCG5 386 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 MFSD8Q8NHS3 518 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 ST8SIA2Q92186 375 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 FAM46BQ96A09 425 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 C5orf34Q96MH7 638 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 KCNK17Q96T54 332 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 SLC25A32Q9H2D1 315 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 CNTD2Q9H8S5 307 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 MED29Q9NX70 200 aa16.72■□□□□ 0.27
CPSF3-201ENST00000238112 D6RAR5 112 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 DUX1O43812 170 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 CXADRP78310 365 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 HSF1Q00613 529 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 ZBTB44Q8NCP5 570 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 OR10H5Q8NGA6 315 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 NPAS1Q99742 590 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 CTSFQ9UBX1 484 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 SUSD2Q9UGT4 822 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 VSIG4Q9Y279 399 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 PCNX3Q9H6A9 2034 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 LOC100509620A0A075B734 347 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 IGKV1D-43A0A0B4J1Z2 117 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 IGHV3-20A0A0C4DH32 117 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 KANTRA0A1W2PQU2 76 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 HPP00738 406 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 LIPCP11150 499 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 MMP16P51512 607 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 ZNF260Q3ZCT1 412 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 KLHL24Q6TFL4 600 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 C16orf47Q6ZP98 133 aaPredicted RBP16.71■□□□□ 0.27
CPSF3-201ENST00000238112 LYPD6Q86Y78 171 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 RELL2Q8NC24 303 aaPredicted RBP16.71■□□□□ 0.27
CPSF3-201ENST00000238112 PXT1Q8NFP0 134 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 LHFPL5Q8TAF8 219 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 RNF133Q8WVZ7 376 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 ST8SIA4Q92187 359 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 PMEPA1Q969W9 287 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 CHST11Q9NPF2 352 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 SLC2A8Q9NY64 477 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 GLS2Q9UI32 602 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 KIF26BQ2KJY2 2108 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 RP1P56715 2156 aa16.71■□□□□ 0.27
CPSF3-201ENST00000238112 CPED1A4D0V7 1026 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 APOBEC1P41238 236 aaKnown RBP16.7■□□□□ 0.26
CPSF3-201ENST00000238112 EIF1AXP47813 144 aaKnown RBP16.7■□□□□ 0.26
CPSF3-201ENST00000238112 FBXW4P57775 412 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 CFHR1Q03591 330 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 C17orf67Q0P5P2 114 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 TAF13Q15543 124 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 LRRC37A5PQ49AS3 106 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 C3orf33Q6P1S2 294 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 ZNF813Q6ZN06 617 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 EIF4E3Q8N5X7 224 aaKnown RBP16.7■□□□□ 0.26
CPSF3-201ENST00000238112 DDIT4LQ96D03 193 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 TMEM185BQ9H7F4 350 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 GPR160Q9UJ42 338 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 VDAC3Q9Y277 283 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms