RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 MPIG6BO95866 241 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 F10P00742 488 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 SFTPBP07988 381 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 NR2C1P13056 603 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 RAB38P57729 211 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 BDH1Q02338 343 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 GUCA2BQ16661 112 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 PRTGQ2VWP7 1150 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 KRBOX4Q5JUW0 171 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 C19orf47Q8N9M1 422 aaKnown RBP7.78□□□□□ -1.16
USP40-203ENST00000427112 OR1S2Q8NGQ3 325 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 FSCN3Q9NQT6 498 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 GDE1Q9NZC3 331 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 A0A1B0GUH1 482 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 TMEM269A0A1B0GVZ9 245 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 ZNF736B4DX44 427 aaPredicted RBP7.78□□□□□ -1.16
USP40-203ENST00000427112 NXPH3O95157 252 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 PGAM2P15259 253 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 NFYBP25208 207 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 CD1CP29017 333 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 PLCXD2Q0VAA5 305 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 RIN1Q13671 783 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 PTCRAQ6ISU1 281 aaPredicted RBP7.78□□□□□ -1.16
USP40-203ENST00000427112 TRAPPC6BQ86SZ2 158 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 SLC51BQ86UW2 128 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 ZSCAN1Q8NBB4 408 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 MARCH1Q8TCQ1 289 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 ELP5Q8TE02 316 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 TM4SF19Q96DZ7 209 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 WDR77Q9BQA1 342 aaPredicted RBP7.78□□□□□ -1.16
USP40-203ENST00000427112 ABHD6Q9BV23 337 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 CST11Q9H112 138 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 OR5H14A6NHG9 310 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 AKAIN1P0CW23 69 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 GABRA1P14867 456 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 AKT2P31751 481 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 HRH1P35367 487 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 OR1D5P58170 312 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 RAP2BP61225 183 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 PPP1R1AQ13522 171 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 HNF4GQ14541 408 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 NHLRC3Q5JS37 347 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 PRAMEF8Q5VWM4 474 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 PRAMEF7Q5VXH5 474 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 ALKBH2Q6NS38 261 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 RPL13AP3Q6NVV1 102 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 Q7L0L9 218 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 LINC00469Q8N7U9 141 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 OR52N4Q8NGI2 321 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 OR1S1Q8NH92 325 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 RNF166Q96A37 237 aaPredicted RBP7.78□□□□□ -1.16
USP40-203ENST00000427112 JSRP1Q96MG2 331 aaPredicted RBP7.78□□□□□ -1.16
USP40-203ENST00000427112 TMPRSS13Q9BYE2 586 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 SFXN1Q9H9B4 322 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 APMAPQ9HDC9 416 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 NPDC1Q9NQX5 325 aaPredicted RBP7.78□□□□□ -1.16
USP40-203ENST00000427112 CD207Q9UJ71 328 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 SLC5A6Q9Y289 635 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 MRPS33Q9Y291 106 aaKnown RBP7.78□□□□□ -1.16
USP40-203ENST00000427112 PRAMEF2O60811 474 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 SMIM10L1P0DMW3 83 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 SDHAP31040 664 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 CSNK1EP49674 416 aaKnown RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 GMFBP60983 142 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 IL13RA1P78552 427 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 DHRS2Q13268 280 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 DYRK1AQ13627 763 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 TRAM1Q15629 374 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 C14orf28Q4W4Y0 310 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 TMEM71Q6P5X7 295 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 ZNF704Q6ZNC4 412 aaPredicted RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 SLC16A9Q7RTY1 509 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 SCARF2Q96GP6 870 aaPredicted RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 SMIM10Q96HG1 83 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 NUDT9Q9BW91 350 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 INPP5EQ9NRR6 644 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 LRP12Q9Y561 859 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 DOCK10Q96BY6 2186 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 ARHGAP21Q5T5U3 1957 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 A0A087WV62 115 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 LOC107986453A0A1B0GWG9 222 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 KANTRA0A1W2PQU2 76 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 OR5K3A6NET4 321 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 OR6C76A6NM76 312 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 C3orf80F5H4A9 247 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 M0R036 132 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 APOC1P02654 83 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 IFNA6P05013 189 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 JMJD7P0C870 316 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 ZNF823P16415 610 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 GABRG2P18507 467 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 CD53P19397 219 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 ALOX5APP20292 161 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 HTR2CP28335 458 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 FAUP35544 74 aaKnown RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 PMPCAQ10713 525 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 C9orf152Q5JTZ5 239 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 PRAMEF20Q5VT98 475 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 ASPHD2Q6ICH7 369 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 RGS7BPQ6MZT1 257 aaPredicted RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms