RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 TMEM186Q96B77 213 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 TIMD4Q96H15 378 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 VSX1Q9NZR4 365 aaPredicted RBP16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 KLHL21Q9UJP4 597 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 GRIP1Q9Y3R0 1128 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 CLDN25C9JDP6 229 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 H7C1C5 153 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 SGCEO43556 437 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 KHDRBS3O75525 346 aaKnown RBP16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 ABHD16AO95870 558 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 HSD17B1P14061 328 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 GSTM3P21266 225 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 MPV17P39210 176 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 RPS6KA3P51812 740 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 LCN6P62502 163 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 GLO1Q04760 184 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 SLC3A1Q07837 685 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 SCGB2A2Q13296 93 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 AQP6Q13520 282 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 KRR1Q13601 381 aaKnown RBP16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 SPATA46Q5T0L3 261 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 RFPL4BQ6ZWI9 263 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 GLB1L2Q8IW92 636 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 TEX29Q8N6K0 151 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 RAB1CQ92928 201 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 RAB39BQ96DA2 213 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 PYURFQ96I23 114 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 RSRC1Q96IZ7 334 aaKnown RBP16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 FAM107BQ9H098 131 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 NARFLQ9H6Q4 476 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 HIF1ANQ9NWT6 349 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 TREM2Q9NZC2 230 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 MAGEL2Q9UJ55 1249 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 FBN3Q75N90 2809 aa16.23■□□□□ 0.19
CCDC28A-203ENST00000617445 TRAV20A0A0B4J274 112 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 UNC119BA6NIH7 251 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 SLC16A7O60669 478 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 TXNDC12O95881 172 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 NGFP01138 241 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 IGHV1-46P01743 117 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 SCG5P05408 212 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 CTLA4P16410 223 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 TSTQ16762 297 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 SPATS1Q496A3 300 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 SAMD4BQ5PRF9 694 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 ACSM5Q6NUN0 579 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 PGM2L1Q6PCE3 622 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 MCUR1Q96AQ8 359 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 REPIN1Q9BWE0 567 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 EMC7Q9NPA0 242 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 ATPIF1Q9UII2 106 aa16.22■□□□□ 0.19
CCDC28A-203ENST00000617445 TRBV4-1A0A0J9YWV2 114 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 FAM157AC9JC47 383 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 J3QW42 95 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 IMPA2O14732 288 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 WNT9BO14905 357 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 SPRY3O43610 288 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 DOK2O60496 412 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 CD55P08174 381 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 CRABP1P29762 137 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 HTR5AP47898 357 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 KCNMB1Q16558 191 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 KRTAP24-1Q3LI83 254 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 MTX3Q5HYI7 312 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 DNM1P34Q6PK57 102 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 SMARCD3Q6STE5 483 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 VASH1Q7L8A9 365 aaPredicted RBP16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 PGAM4Q8N0Y7 254 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 RNF148Q8N7C7 305 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 RASD2Q96D21 266 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 FUZQ9BT04 418 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 SYT4Q9H2B2 425 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 ZNF665Q9H7R5 613 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 NDE1Q9NXR1 346 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 METRNQ9UJH8 293 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 IER3IP1Q9Y5U9 82 aa16.21■□□□□ 0.19
CCDC28A-203ENST00000617445 TCF21O43680 179 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 GADD45GO95257 159 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 IFNGR2P38484 337 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 MVKQ03426 396 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 PSG7Q13046 419 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 SEC23BQ15437 767 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 THSD4Q6ZMP0 1018 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 PEG10Q86TG7 708 aaKnown RBP16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 FAM86B1Q8N7N1 296 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 OR52J3Q8NH60 311 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 GTF3AQ92664 365 aaKnown RBP16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 LRRC37BQ96QE4 947 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 DCLRE1CQ96SD1 692 aaKnown RBP16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 PLEK2Q9NYT0 353 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 CD300AQ9UGN4 299 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 TAGLN3Q9UI15 199 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 COA3Q9Y2R0 106 aaPredicted RBP16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 WIPI2Q9Y4P8 454 aa16.2■□□□□ 0.18
CCDC28A-203ENST00000617445 ZSCAN5BA6NJL1 495 aa16.19■□□□□ 0.18
CCDC28A-203ENST00000617445 SOCS2O14508 198 aa16.19■□□□□ 0.18
CCDC28A-203ENST00000617445 DYNC1I1O14576 645 aa16.19■□□□□ 0.18
CCDC28A-203ENST00000617445 ARPC3O15145 178 aa16.19■□□□□ 0.18
CCDC28A-203ENST00000617445 TIMM8AO60220 97 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-203ENST00000617445 UBOX5O94941 541 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms