RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TBC1D3DA0A087WVF3 549 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TBC1D3IA0A087WXS9 549 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TRBV5-7A0A0A0MS05 114 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 hCG_1809904A0A1W2PP81 198 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 A0A1W2PR64 198 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 A0A1W2PRV1 198 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 C5orf52A6NGY3 159 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TBC1D3LB9A6J9 549 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 C11orf98E9PRG8 122 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 XKRYO14609 159 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 RDH16O75452 317 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 HEXAP06865 529 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TBC1D3HP0C7X1 549 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 CD79AP11912 226 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 ZNF44P15621 663 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TACR3P29371 465 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 CYCSP99999 105 aaKnown RBP11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 DEFA6Q01524 100 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 PLAURQ03405 335 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 FAM53BQ14153 422 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 ACER2Q5QJU3 275 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TBC1D3CQ6IPX1 549 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 ADGRE4PQ86SQ3 457 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 FJX1Q86VR8 437 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TBC1D3Q8IZP1 549 aaPredicted RBP11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 ADAD2Q8NCV1 583 aaKnown RBP11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 SLC30A7Q8NEW0 376 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 THRSPQ92748 146 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 HIST1H2BAQ96A08 127 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 RERGQ96A58 199 aaPredicted RBP11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 ELF4Q99607 663 aaPredicted RBP11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 SEC61A2Q9H9S3 476 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TMEM74BQ9NUR3 256 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 DEC1Q9P2X7 70 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TEX13DA0A0J9YY54 714 aaPredicted RBP11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 A0A1W2PPE3 182 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 OIP5O43482 229 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 EFEMP2O95967 443 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 PEBP1P30086 187 aaKnown RBP11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 HRH1P35367 487 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 CAV2P51636 162 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 LBX1P52954 281 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 EIF5AP63241 154 aaKnown RBP11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 TDGQ13569 410 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 MOGAT2Q3SYC2 334 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 SHISA5Q8N114 240 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 PRSS35Q8N3Z0 413 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 ROBO4Q8WZ75 1007 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 CMBLQ96DG6 245 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 GATCO43716 136 aaKnown RBP11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 GPR75O95800 540 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 RHOP08100 348 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 RAB6AP20340 208 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 TMEM52BQ4KMG9 183 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 NCMAPQ5T1S8 102 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 PRSS41Q7RTY9 318 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 MARCH1Q8TCQ1 289 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 CD300LFQ8TDQ1 290 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 NMNAT2Q9BZQ4 307 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 FN3KRPQ9HA64 309 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 COLEC10Q9Y6Z7 277 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 PRUNE2Q8WUY3 3088 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 A0A0A6YYC8 382 aaPredicted RBP11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 A0A1W2PPH5 198 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 EFCAB7A8K855 629 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 I3L1I5 382 aaPredicted RBP11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 UBE2CO00762 179 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 PMP2P02689 132 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 GNALP38405 381 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 KIR3DL2P43630 455 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 SGCGQ13326 291 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 ZNF684Q5T5D7 378 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 TAF8Q7Z7C8 310 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 FRMD1Q8N878 549 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 ZSCAN4Q8NAM6 433 aaPredicted RBP11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 DMBX1Q8NFW5 382 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 SECTM1Q8WVN6 248 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 KIRREL1Q96J84 757 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 AMELYQ99218 206 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 ZNF426Q9BUY5 554 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 CHRDQ9H2X0 955 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 ACKR4Q9NPB9 350 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 PRR13Q9NZ81 148 aa11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 YBX2Q9Y2T7 364 aaKnown RBP11.59□□□□□ -0.55
SFSWAP-209ENST00000540469 KIAA1549LQ6ZVL6 1849 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 SCN5AQ14524 2016 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 LRRK1Q38SD2 2015 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 A0A087WUJ7 227 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 A0A1W2PPC1 479 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 ADH1CP00326 375 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 PLGP00747 810 aaPredicted RBP11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 MT-ND4LP03901 98 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 SFTPBP07988 381 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 NME1P15531 152 aaKnown RBP11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 EIF2S3P41091 472 aaKnown RBP11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 SLC22A6Q4U2R8 563 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 EXOSC6Q5RKV6 272 aaKnown RBP11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 TMEM225Q6GV28 225 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 CDC20BQ86Y33 519 aa11.58□□□□□ -0.56
SFSWAP-209ENST00000540469 DMRTC2Q8IXT2 367 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms