RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 HTR1FP30939 366 aa25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 HSPA13P48723 471 aa25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 PSG4Q00888 419 aa25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 SLC18B1Q6NT16 456 aa25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 RFKQ969G6 155 aa25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 PIK3IP1Q96FE7 263 aa25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 WACQ9BTA9 647 aa25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 WNT5BQ9H1J7 359 aa25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 ESRP2Q9H6T0 727 aaKnown RBP25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 ASH1LQ9NR48 2969 aaKnown RBP25.75■■□□□ 1.71
LIMCH1-211ENST00000509638 MRPL3P09001 348 aaKnown RBP25.74■■□□□ 1.71
LIMCH1-211ENST00000509638 MAD2L1BPQ15013 274 aaPredicted RBP25.74■■□□□ 1.71
LIMCH1-211ENST00000509638 DAZAP2Q15038 168 aaPredicted RBP25.74■■□□□ 1.71
LIMCH1-211ENST00000509638 OCLNQ16625 522 aa25.74■■□□□ 1.71
LIMCH1-211ENST00000509638 C3orf36Q3SXR2 165 aa25.74■■□□□ 1.71
LIMCH1-211ENST00000509638 MEDAGQ5VYS4 303 aa25.74■■□□□ 1.71
LIMCH1-211ENST00000509638 ZNF774Q6NX45 483 aa25.74■■□□□ 1.71
LIMCH1-211ENST00000509638 APH1BQ8WW43 257 aa25.74■■□□□ 1.71
LIMCH1-211ENST00000509638 FBXL3Q9UKT7 428 aa25.74■■□□□ 1.71
LIMCH1-211ENST00000509638 DPRXA6NFQ7 191 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 ZNF593O00488 134 aaPredicted RBP25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 RER1O15258 196 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 DOK2O60496 412 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 CD40P25942 277 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 GGTLC2Q14390 218 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 CFAP77Q6ZQR2 320 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 USP51Q70EK9 711 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 C8orf59Q8N0T1 100 aaPredicted RBP25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 CNN2Q99439 309 aaKnown RBP25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 WARS2Q9UGM6 360 aaKnown RBP25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 GDF2Q9UK05 429 aaPredicted RBP25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 TACC2O95359 2948 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 UNC79Q9P2D8 2635 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 SGCEO43556 437 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 SERPINA5P05154 406 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 PTAFRP25105 342 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 NR1H2P55055 460 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 PLP2Q04941 152 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 SPOCK1Q08629 439 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 PCK2Q16822 640 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 NCMAPQ5T1S8 102 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 DPY19L4Q7Z388 723 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 OR2AJ1Q8NGZ0 328 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 CLN6Q9NWW5 311 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 PLEK2Q9NYT0 353 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 LRBAP50851 2863 aa25.73■■□□□ 1.71
LIMCH1-211ENST00000509638 PLCE1Q9P212 2302 aa25.72■■□□□ 1.71
LIMCH1-211ENST00000509638 TEX30Q5JUR7 227 aa25.72■■□□□ 1.71
LIMCH1-211ENST00000509638 CPEB3Q8NE35 698 aaKnown RBP25.72■■□□□ 1.71
LIMCH1-211ENST00000509638 GJC3Q8NFK1 279 aa25.72■■□□□ 1.71
LIMCH1-211ENST00000509638 CNIH3Q8TBE1 160 aa25.72■■□□□ 1.71
LIMCH1-211ENST00000509638 HS3ST6Q96QI5 342 aa25.72■■□□□ 1.71
LIMCH1-211ENST00000509638 RTTNQ86VV8 2226 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 ROS1P08922 2347 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 IQCMA0A1B0GVH7 501 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 ABCD4O14678 606 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 TMCC2O75069 709 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 APEX1P27695 318 aaKnown RBP25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 LOXP28300 417 aaPredicted RBP25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 NUDT6P53370 316 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 ISL1P61371 349 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 HIST1H3AP68431 136 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 HIST2H3PS2Q5TEC6 136 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 ZNF787Q6DD87 383 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 TMEM154Q6P9G4 183 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 HIST2H3AQ71DI3 136 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 VASH1Q7L8A9 365 aaPredicted RBP25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 DCXRQ7Z4W1 244 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 ALDH16A1Q8IZ83 802 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 MARVELD3Q96A59 401 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 Q96MT0 163 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 RASSF4Q9H2L5 321 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 ADGRL4Q9HBW9 690 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 HSPE1-MOB4S4R3N1 261 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 FBN2P35556 2912 aa25.71■■□□□ 1.71
LIMCH1-211ENST00000509638 WBP4O75554 376 aaKnown RBP25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 RAB35Q15286 201 aa25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 CCDC92Q53HC0 331 aaPredicted RBP25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 SLC16A9Q7RTY1 509 aa25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 SLC30A7Q8NEW0 376 aa25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 OR51G2Q8NGK0 314 aa25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 SMAP2Q8WU79 429 aaPredicted RBP25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 MAP6Q96JE9 813 aa25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 ZNF184Q99676 751 aaPredicted RBP25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 HAO2Q9NYQ3 351 aa25.7■■□□□ 1.71
LIMCH1-211ENST00000509638 APOL3O95236 402 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 GOSR1O95249 250 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 HTR5AP47898 357 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 NAAAQ02083 359 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 ADAM5Q6NVV9 412 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 PIAS4Q8N2W9 510 aaPredicted RBP25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 C1orf198Q9H425 327 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 SNTNA6NMZ2 147 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 CD3EP07766 207 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 MTNR1AP48039 350 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 ZNF91Q05481 1191 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 TMED1Q13445 227 aa25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 EIF2B1Q14232 305 aaKnown RBP25.69■■□□□ 1.7
LIMCH1-211ENST00000509638 SHFQ7M4L6 423 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms