RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ARHGAP24Q8N264 748 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 ABHD4Q8TB40 342 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 KLF14Q8TD94 323 aaPredicted RBP15.69■□□□□ 0.1
CLN3-202ENST00000355477 C4orf45Q96LM5 186 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 SNX18Q96RF0 628 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 WACQ9BTA9 647 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 GPR160Q9UJ42 338 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 LYVE1Q9Y5Y7 322 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 LOC100289279A0A1B0GTE1 492 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 SGCEO43556 437 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 LMX1BO60663 402 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 HIST1H1CP16403 213 aaKnown RBP15.68■□□□□ 0.1
CLN3-202ENST00000355477 SLC6A6P31641 620 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 MAGEA2P43356 314 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 CHN2P52757 468 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 CCL8P80075 99 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 TRIM25Q14258 630 aaKnown RBP15.68■□□□□ 0.1
CLN3-202ENST00000355477 LCN8Q6JVE9 175 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 TMEM154Q6P9G4 183 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 OR4K13Q8NH42 304 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 GNPDA2Q8TDQ7 276 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 SNX33Q8WV41 574 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 IPCEF1Q8WWN9 437 aaPredicted RBP15.68■□□□□ 0.1
CLN3-202ENST00000355477 NMNAT3Q96T66 252 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 BTBD10Q9BSF8 475 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 IFT27Q9BW83 186 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 CHODLQ9H9P2 273 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 SRA1Q9HD15 236 aaKnown RBP15.68■□□□□ 0.1
CLN3-202ENST00000355477 ZNF275Q9NSD4 429 aaPredicted RBP15.68■□□□□ 0.1
CLN3-202ENST00000355477 ASH2LQ9UBL3 628 aa15.68■□□□□ 0.1
CLN3-202ENST00000355477 IGLV1-36A0A0B4J1U3 117 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 WNT9BO14905 357 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 ARPC3O15145 178 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 DOK2O60496 412 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 RP2O75695 350 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 KRT36O76013 467 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 COX5BP10606 129 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 ACHEP22303 614 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 GCH1P30793 250 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 IFNGR2P38484 337 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 HTR5AP47898 357 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 MMP15P51511 669 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 LSM6P62312 80 aaKnown RBP15.67■□□□□ 0.1
CLN3-202ENST00000355477 SCRN3Q0VDG4 424 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 PPP1R8Q12972 351 aaKnown RBP15.67■□□□□ 0.1
CLN3-202ENST00000355477 TSPAN31Q12999 210 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 AQP6Q13520 282 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 KCNMB1Q16558 191 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 MEP1BQ16820 701 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 CHRFAM7AQ494W8 412 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 CCDC92Q53HC0 331 aaPredicted RBP15.67■□□□□ 0.1
CLN3-202ENST00000355477 MTX3Q5HYI7 312 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 MBNL2Q5VZF2 373 aaKnown RBP15.67■□□□□ 0.1
CLN3-202ENST00000355477 ZNF770Q6IQ21 691 aaPredicted RBP15.67■□□□□ 0.1
CLN3-202ENST00000355477 LEG1Q6P5S2 330 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 DHFR2Q86XF0 187 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 OR6V1Q8N148 313 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 OR9Q2Q8NGE9 314 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 OR4C15Q8NGM1 316 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 SLC7A6Q92536 515 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 CLPTM1LQ96KA5 538 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 MDFIQ99750 246 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 POFUT1Q9H488 388 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 ELOVL3Q9HB03 270 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 TMEM160Q9NX00 188 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 VNN3Q9NY84 501 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 NKIRAS2Q9NYR9 191 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 TAS2R1Q9NYW7 299 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 NDRG4Q9ULP0 352 aaKnown RBP15.67■□□□□ 0.1
CLN3-202ENST00000355477 B9D1Q9UPM9 204 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 TANC2Q9HCD6 1990 aa15.67■□□□□ 0.1
CLN3-202ENST00000355477 TNFRSF11BO00300 401 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 CDC14BO60729 498 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 TGFAP01135 160 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 GAAP10253 952 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 IGFBP5P24593 272 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 CENPAP49450 140 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 MRPS11P82912 194 aaKnown RBP15.66■□□□□ 0.1
CLN3-202ENST00000355477 MOGQ16653 247 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 TSTQ16762 297 aaKnown RBP15.66■□□□□ 0.1
CLN3-202ENST00000355477 PCGF3Q3KNV8 242 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 FAM166AQ6J272 317 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 UNQ6126/PRO20091Q6UXV3 157 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 ZNF620Q6ZNG0 422 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.66■□□□□ 0.1
CLN3-202ENST00000355477 TRIM15Q9C019 465 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 MUC13Q9H3R2 512 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 MAGIXQ9H6Y5 334 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 EGLN3Q9H6Z9 239 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 PLEK2Q9NYT0 353 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 KLHL21Q9UJP4 597 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 CDC42EP3Q9UKI2 254 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 DYSFO75923 2080 aa15.66■□□□□ 0.1
CLN3-202ENST00000355477 OR6C68A6NDL8 312 aa15.65■□□□□ 0.1
CLN3-202ENST00000355477 OR6C6A6NF89 314 aa15.65■□□□□ 0.1
CLN3-202ENST00000355477 RER1O15258 196 aa15.65■□□□□ 0.1
CLN3-202ENST00000355477 ABHD16AO95870 558 aa15.65■□□□□ 0.1
CLN3-202ENST00000355477 GASTP01350 101 aa15.65■□□□□ 0.1
CLN3-202ENST00000355477 CRABP1P29762 137 aa15.65■□□□□ 0.1
CLN3-202ENST00000355477 GPR6P46095 362 aaPredicted RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms