RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ASH2LQ9UBL3 628 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 KCNN3Q9UGI6 736 aa25.82■■□□□ 1.72
LIMCH1-211ENST00000509638 C12orf71A8MTZ7 269 aa25.81■■□□□ 1.72
LIMCH1-211ENST00000509638 RAB36O95755 333 aa25.81■■□□□ 1.72
LIMCH1-211ENST00000509638 HRGP04196 525 aa25.81■■□□□ 1.72
LIMCH1-211ENST00000509638 BLVRAP53004 296 aa25.81■■□□□ 1.72
LIMCH1-211ENST00000509638 ADAM8P78325 824 aa25.81■■□□□ 1.72
LIMCH1-211ENST00000509638 SLC35D3Q5M8T2 416 aa25.81■■□□□ 1.72
LIMCH1-211ENST00000509638 GID4Q8IVV7 300 aa25.81■■□□□ 1.72
LIMCH1-211ENST00000509638 RNF121Q9H920 327 aa25.81■■□□□ 1.72
LIMCH1-211ENST00000509638 NGBQ9NPG2 151 aa25.81■■□□□ 1.72
LIMCH1-211ENST00000509638 CCDC182A6NF36 153 aa25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 MMP7P09237 267 aaPredicted RBP25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 ZNF32P17041 273 aa25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 SNRPGP62308 76 aaKnown RBP25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 RAB1AP62820 205 aa25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 AQP6Q13520 282 aa25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 ZNF691Q5VV52 312 aa25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 B3GLCTQ6Y288 498 aa25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 WDR76Q9H967 626 aa25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 MOV10Q9HCE1 1003 aaKnown RBP25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 CADP27708 2225 aa25.8■■□□□ 1.72
LIMCH1-211ENST00000509638 H0YAE9 185 aa25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 M0R1B8 84 aa25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 IGKV3-15P01624 115 aa25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 GSTT1P30711 240 aa25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 IDH3GP51553 393 aaPredicted RBP25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 LCN1P1Q5VSP4 162 aa25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 TMEM53Q6P2H8 277 aa25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 H2AFY2Q9P0M6 372 aaPredicted RBP25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 AASSQ9UDR5 926 aa25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 LHFPL6Q9Y693 200 aa25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 ABCA4P78363 2273 aa25.79■■□□□ 1.72
LIMCH1-211ENST00000509638 SIAH2O43255 324 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 CELA3BP08861 270 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 GNAO1P09471 354 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 CBR1P16152 277 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 ZNF823P16415 610 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 ARR3P36575 388 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 CDH11P55287 796 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 PCBD1P61457 104 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 C6orf52Q5T4I8 152 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 MYPOPQ86VE0 399 aaPredicted RBP25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 ERI1Q8IV48 349 aaKnown RBP25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 LINC00346Q8IVM7 164 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 ZNF582Q96NG8 517 aaPredicted RBP25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 CRNNQ9UBG3 495 aaPredicted RBP25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 NBPF19A0A087WUL8 3843 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 DEFB108AA8MXU0 73 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 PSKH1P11801 424 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 GABRB1P18505 474 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 RPS27P42677 84 aaKnown RBP25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 IL5RAQ01344 420 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 SNCBQ16143 134 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 HIST2H2BCQ6DN03 193 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 MEPCEQ7L2J0 689 aaKnown RBP25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 TFAP2CQ92754 450 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 INTS14Q96SY0 518 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 TEAD3Q99594 435 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 KCNG2Q9UJ96 466 aa25.78■■□□□ 1.72
LIMCH1-211ENST00000509638 SLC22A31A6NKX4 558 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 MPZL2O60487 215 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 IGLV1-44P01699 117 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 PAX7P23759 505 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 ENTPD1P49961 510 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 BEX5Q5H9J7 111 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 PABPC1L2AQ5JQF8 200 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 CORO6Q6QEF8 472 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 SYT9Q86SS6 491 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 FAM169BQ8N8A8 192 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 SETD9Q8NE22 299 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 PLPPR2Q96GM1 343 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 MS4A3Q96HJ5 214 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 OR2H1Q9GZK4 316 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 HEATR1Q9H583 2144 aaKnown RBP25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 MARCH7Q9H992 704 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 CYB5R1Q9UHQ9 305 aa25.77■■□□□ 1.72
LIMCH1-211ENST00000509638 IGHV1-18A0A0C4DH31 117 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 SELENOFO60613 162 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 ENTPD6O75354 484 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 SPARCP09486 303 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 CECR9P0C854 216 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 ZNF14P17017 642 aaPredicted RBP25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 NAA10P41227 235 aaPredicted RBP25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 BSPH1Q075Z2 132 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 SCRN3Q0VDG4 424 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 IL18R1Q13478 541 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 RAB39AQ14964 217 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 SLC25A30Q5SVS4 291 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 TMEM108Q6UXF1 575 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 ZNF584Q8IVC4 421 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 TIGD4Q8IY51 512 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 OR6N2Q8NGY6 317 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 AKR7LQ8NHP1 331 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 RHOXF1Q8NHV9 184 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 ZNF75AQ96N20 296 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 CDADC1Q9BWV3 514 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 TIMM10BQ9Y5J6 103 aa25.76■■□□□ 1.71
LIMCH1-211ENST00000509638 A6NNC1 897 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms