RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 BLOC1S3Q6QNY0 202 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 CEACAM19Q7Z692 300 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 OR4C3Q8NH37 302 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 PBDC1Q9BVG4 233 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 PTGDR2Q9Y5Y4 395 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 CITO14578 2027 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 TRMUO75648 421 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 FBXO45P0C2W1 286 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 VSIG10L2P0DP72 767 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 HTR6P50406 440 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 BCL2A1Q16548 175 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 LETMD1Q6P1Q0 360 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 FAM71CQ8NEG0 241 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 OR2AK2Q8NG84 335 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 OR6Q1Q8NGQ2 317 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 GPR148Q8TDV2 347 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 APOBEC3DQ96AK3 386 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 UNKLQ9H9P5 680 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 COA4Q9NYJ1 87 aa8.34□□□□□ -1.07
LIMCH1-202ENST00000381753 MAP1BP46821 2468 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ANKRD33BA6NCL7 494 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 SHISA8B8ZZ34 492 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 GNB3P16520 340 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 LIPAP38571 399 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 GNG10P50151 68 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 PPP5CP53041 499 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 RAB11AP62491 216 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 TPBGQ13641 420 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 XKR7Q5GH72 579 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 RABL3Q5HYI8 236 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 SPAG16Q8N0X2 631 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 SFXN3Q9BWM7 321 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 MYH9P35579 1960 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 DOCK2Q92608 1830 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 NBL1P41271 181 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 PPP1R8Q12972 351 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ZFP69Q49AA0 526 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 C1orf220Q5T0J3 134 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF787Q6DD87 383 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 RTL6Q6ICC9 239 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 SBSNQ6UWP8 590 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 OR9I1Q8NGQ6 314 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ADAMTS16Q8TE57 1224 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 PINX1Q96BK5 328 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 TM4SF18Q96CE8 201 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 DAZAP1Q96EP5 407 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF350Q9GZX5 532 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 RNPEPL1Q9HAU8 725 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 MOKQ9UQ07 419 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 NPTNQ9Y639 398 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ANKRD36CQ5JPF3 1778 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 CACNA1BQ00975 2339 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 STRCP1A6NGW2 1772 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ALG1L2C9J202 215 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 NPPBP16860 134 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 PRKAR1BP31321 381 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 DLX5P56178 289 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 PPP1CBP62140 327 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 SYPL1Q16563 259 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 CTU2Q2VPK5 515 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 NSUN5P1Q3KNT7 163 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 VMA21Q3ZAQ7 101 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 TMEM135Q86UB9 458 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 OR5D18Q8NGL1 313 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 MMP25Q9NPA2 562 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ITM2AO43736 263 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 KNG1P01042 644 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 IFNA10P01566 189 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 UBCP0CG48 685 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 PET100P0DJ07 73 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ABCD3P28288 659 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 TRIM23P36406 574 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 CSN1S1P47710 185 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 DIO1P49895 249 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 LAPTM4AQ15012 233 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 PLD6Q8N2A8 252 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 PQLC1Q8N2U9 271 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 WDSUB1Q8N9V3 476 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 ISL2Q96A47 359 aa8.33□□□□□ -1.08
LIMCH1-202ENST00000381753 A0A0A6YYH2 397 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 hADV38S2A0JD32 116 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 A6NJ64 397 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 SNX3O60493 162 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 GLAP06280 429 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 CD36P16671 472 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 RHOBP62745 196 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 THEM4Q5T1C6 240 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 SFRP5Q5T4F7 317 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 FAM166AQ6J272 317 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 MFSD12Q6NUT3 480 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 BRICD5Q6PL45 260 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 TIPARPQ7Z3E1 657 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 LHFPL3Q86UP9 236 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 ENTHD1Q8IYW4 607 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 ACBD7Q8N6N7 88 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 MINDY2Q8NBR6 621 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 OR2T6Q8NHC8 308 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 FNDC9Q8TBE3 224 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 TCTEX1D2Q8WW35 142 aa8.32□□□□□ -1.08
LIMCH1-202ENST00000381753 DCUN1D4Q92564 292 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 149.4 ms